Generating Protein Variants with Different Generative Models (HMM, VAE, ESM-2, ProtGPT2)
☆11Mar 14, 2024Updated last year
Alternatives and similar repositories for protein-variants-generation
Users that are interested in protein-variants-generation are comparing it to the libraries listed below
Sorting:
- Generic methods, types and modules for the BioJulia ecosystem.☆12Jul 11, 2024Updated last year
- Demo of diffusion models #DDPM applied to molecular dynamics of small peptide☆14Jan 26, 2024Updated 2 years ago
- Sequences from Adaptyv Bio’s EGFR Protein Design Competition☆15Aug 28, 2025Updated 6 months ago
- Code for NeurIPS 2024 paper "A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models"☆14Oct 17, 2024Updated last year
- ☆16Feb 14, 2025Updated last year
- ☆21Oct 22, 2024Updated last year
- ☆19Oct 18, 2024Updated last year
- QLoRA for Masked Language Modeling☆23Sep 11, 2023Updated 2 years ago
- A DGL implementation of "Directional Message Passing for Molecular Graphs" (ICLR 2020).☆21Oct 21, 2023Updated 2 years ago
- Evolutionary Algorithm with Diffusion Models for Protein Design☆30Jan 7, 2026Updated 2 months ago
- ☆35Jan 26, 2026Updated last month
- Homebrew formulae for bioinformatics software only available for Linux☆27Aug 23, 2019Updated 6 years ago
- AutoML system for building trustworthy peptide bioactivity predictors☆37Mar 2, 2026Updated last week
- Contrastive learning harmonizing protein language models and natural language models☆40Jun 12, 2024Updated last year
- Adaptive string method implementation in AmberTools23 and Amber22☆14Jan 7, 2025Updated last year
- ☆18Dec 5, 2024Updated last year
- QM40 is a QMx type of dataset which includes 150K molecules optimized from B3LYP/6-31G(2df,p) level of theory in the Gaussian16 with QM p…☆20Mar 25, 2025Updated 11 months ago
- Late nights, long commits, quiet focus. A colorscheme for performance.☆14Jan 18, 2026Updated last month
- Tree-Invent: A novel molecular generative model constrained with topological tree☆13Jul 26, 2023Updated 2 years ago
- A Transfer Learning Study of Gas Adsorption in Metal-Organic Frameworks☆14Jul 15, 2020Updated 5 years ago
- ☆12Jul 3, 2018Updated 7 years ago
- R Shiny application "Vaccine Designer" aiming for the construction of vaccine sequences based on multi epitope design workflow.☆10Jun 25, 2024Updated last year
- AI for a cure, a combination of Latent-GAN and VAE-JTNN to create 100% valid drug like molecules☆10Mar 16, 2020Updated 5 years ago
- ☆12Mar 13, 2024Updated last year
- Automated Complex Generator☆14Dec 16, 2024Updated last year
- Supporting code for Deep Neural Network or Dermatologist?☆10Nov 14, 2019Updated 6 years ago
- A conda-smithy repository for lammps.☆10Sep 12, 2025Updated 5 months ago
- A program for the conformational search in flexible acyclic molecules☆11Jul 12, 2022Updated 3 years ago
- Systematic Multi-Trait AAV Capsid Engineering for Efficient Gene Delivery (Eid et al., Nature Communications, 2024)☆11Aug 26, 2024Updated last year
- De novo peptide sequencing for DDA and DIA by deep learning☆40Nov 26, 2020Updated 5 years ago
- ☆10Dec 20, 2023Updated 2 years ago
- Alignment workflow for Kids-First DRC☆11Feb 12, 2026Updated 3 weeks ago
- A Universal Neural Network Solver for The Schrödinger Equation☆11Dec 3, 2024Updated last year
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆12Sep 3, 2019Updated 6 years ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 6 years ago
- A protein language model for learning the SARS-CoV-2 fitness landscape☆12Apr 22, 2025Updated 10 months ago
- This is for the AI enzyme design course☆13Nov 10, 2025Updated 4 months ago
- PSI-MOD ontology for modified and unmodified amino acid residues☆14Jan 8, 2026Updated 2 months ago
- Deep Generative Models: Diffusion Models for Molecule Generation☆10Jun 17, 2024Updated last year