Generating Protein Variants with Different Generative Models (HMM, VAE, ESM-2, ProtGPT2)
☆11Mar 14, 2024Updated 2 years ago
Alternatives and similar repositories for protein-variants-generation
Users that are interested in protein-variants-generation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Feb 3, 2026Updated 8 months ago
- QLoRA for Masked Language Modeling☆23Sep 11, 2023Updated 3 years ago
- Generic methods, types and modules for the BioJulia ecosystem.☆12Oct 3, 2026Updated 2 weeks ago
- ☆17Feb 14, 2025Updated last year
- Trias: an encoder-decoder model for generating synthetic eukaryotic mRNA sequences☆14Apr 28, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Demo of diffusion models #DDPM applied to molecular dynamics of small peptide☆14Jan 26, 2024Updated 2 years ago
- ☆18May 15, 2023Updated 3 years ago
- ☆21Oct 22, 2024Updated last year
- ☆13Jul 16, 2026Updated 3 months ago
- ☆18Jan 2, 2025Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Nov 29, 2023Updated 2 years ago
- Pangenome analysis using random forests☆16Dec 9, 2025Updated 10 months ago
- ☆19Jul 10, 2025Updated last year
- MarinDNA - open development of genomic language models☆38Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A biological dual-language foundation model☆11Jun 16, 2025Updated last year
- Code for NeurIPS 2024 paper "A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models"☆18Oct 17, 2024Updated 2 years ago
- ☆14Dec 10, 2018Updated 7 years ago
- ☆17Mar 24, 2026Updated 6 months ago
- PyTorch implementation of Basenji2.☆22Apr 29, 2025Updated last year
- ☆13Jun 7, 2024Updated 2 years ago
- A collection of R scripts covering the entire analysis workflow for single-cell RNA sequencing (scRNA-seq).☆40Aug 10, 2026Updated 2 months ago
- ☆16Mar 1, 2025Updated last year
- Protein design and variant prediction using autoregressive generative models☆23Feb 27, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆23Feb 4, 2023Updated 3 years ago
- A DGL implementation of "Directional Message Passing for Molecular Graphs" (ICLR 2020).☆21Oct 21, 2023Updated 3 years ago
- This repository contains the codebase for the paper "Leveraging ancestral sequence reconstruction for protein representation learning".☆14Jun 24, 2026Updated 3 months ago
- ☆12Dec 10, 2024Updated last year
- Exploring how tokenization shapes the performance and generalization of single-cell foundation models.☆21Oct 13, 2026Updated last week
- Sequences from Adaptyv Bio’s EGFR Protein Design Competition☆16Aug 28, 2025Updated last year
- Scripts to perform active learning as described in the referenced article.☆13Sep 17, 2025Updated last year
- Tree-Invent: A novel molecular generative model constrained with topological tree☆14Jul 26, 2023Updated 3 years ago
- ☆16Aug 22, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆28Jun 5, 2025Updated last year
- The official repository for the ARSENAL model☆21Jul 3, 2026Updated 3 months ago
- MMoE: Multimodal Mixture-of-Experts (EMNLP 2024)☆16Nov 14, 2024Updated last year
- ☆13Aug 18, 2023Updated 3 years ago
- ☆20Oct 18, 2024Updated 2 years ago
- ☆53Aug 19, 2024Updated 2 years ago
- Natural Language to SQL☆13Oct 13, 2023Updated 3 years ago