Generating Protein Variants with Different Generative Models (HMM, VAE, ESM-2, ProtGPT2)
☆11Mar 14, 2024Updated 2 years ago
Alternatives and similar repositories for protein-variants-generation
Users that are interested in protein-variants-generation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11Feb 3, 2026Updated 6 months ago
- QLoRA for Masked Language Modeling☆23Sep 11, 2023Updated 2 years ago
- Generic methods, types and modules for the BioJulia ecosystem.☆12Jul 11, 2024Updated 2 years ago
- ☆16Feb 14, 2025Updated last year
- Demo of diffusion models #DDPM applied to molecular dynamics of small peptide☆14Jan 26, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆21Oct 22, 2024Updated last year
- ☆13Jul 16, 2026Updated last month
- ☆18May 15, 2023Updated 3 years ago
- ☆18Jan 2, 2025Updated last year
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆18Nov 29, 2023Updated 2 years ago
- Pangenome analysis using random forests☆16Dec 9, 2025Updated 8 months ago
- ☆19Jul 10, 2025Updated last year
- Code for NeurIPS 2024 paper "A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models"☆16Oct 17, 2024Updated last year
- A biological dual-language foundation model☆11Jun 16, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Sequences from Adaptyv Bio’s EGFR Protein Design Competition☆16Aug 28, 2025Updated 11 months ago
- ☆14Dec 10, 2018Updated 7 years ago
- PyTorch implementation of Basenji2.☆22Apr 29, 2025Updated last year
- ☆16Mar 1, 2025Updated last year
- ☆17Mar 24, 2026Updated 4 months ago
- Protein design and variant prediction using autoregressive generative models☆23Feb 27, 2023Updated 3 years ago
- A collection of R scripts covering the entire analysis workflow for single-cell RNA sequencing (scRNA-seq).☆35Aug 10, 2026Updated last week
- The official repository for the ARSENAL model☆18Jul 3, 2026Updated last month
- ☆23Feb 4, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- This repository contains the codebase for the paper "Leveraging ancestral sequence reconstruction for protein representation learning".☆13Jun 24, 2026Updated last month
- ☆12Dec 10, 2024Updated last year
- ☆16Aug 22, 2022Updated 3 years ago
- A DGL implementation of "Directional Message Passing for Molecular Graphs" (ICLR 2020).☆21Oct 21, 2023Updated 2 years ago
- Exploring how tokenization shapes the performance and generalization of single-cell foundation models.☆20Apr 16, 2026Updated 4 months ago
- ☆20Oct 18, 2024Updated last year
- ☆27Jun 5, 2025Updated last year
- ☆13Aug 18, 2023Updated 3 years ago
- Tree-Invent: A novel molecular generative model constrained with topological tree☆14Jul 26, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Masked language models of biosynthetic gene clusters☆18Jul 27, 2022Updated 4 years ago
- Python package of codon usage bias analysis tools☆21May 16, 2026Updated 3 months ago
- Template with code & dataset for the "Structural basis for solubility in protein expression systems" challenge at the Copenhagen Bioinfor…☆24Apr 25, 2021Updated 5 years ago
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆40Mar 13, 2024Updated 2 years ago
- DeepSoluE☆18Sep 18, 2023Updated 2 years ago
- Natural Language to SQL☆13Oct 13, 2023Updated 2 years ago
- Reference-free analysis of genetic architecture☆23Sep 21, 2024Updated last year