Alternatives and similar repositories for gwas_scripts

Users that are interested in gwas_scripts are comparing it to the libraries listed below

• weizhouUMICH / SAIGE
  ☆195Updated 3 years ago
• bernatgel / karyoploteR
  karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
  ☆345Updated 4 months ago
• stephenturner / qqman
  An R package for creating Q-Q and manhattan plots from GWAS results
  ☆170Updated this week
• YuLab-SMU / ChIPseeker
  ChIP peak Annotation, Comparison and Visualization
  ☆239Updated 2 weeks ago
• molgenis / systemsgenetics
  Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
  ☆175Updated 10 months ago
• JonJala / mtag
  Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
  ☆199Updated 2 years ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆125Updated 10 months ago
• choishingwan / PRSice
  A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
  ☆200Updated last year
• freeseek / gtc2vcf
  Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF
  ☆160Updated 2 months ago
• zhanxw / rvtests
  Rare variant test software for next generation sequencing data
  ☆140Updated 3 years ago
• h3abionet / h3agwas
  GWAS Pipeline for H3Africa
  ☆113Updated 5 months ago
• YaoLab-Bioinfo / shinyCircos
  an R/shiny application for creation of Circos plot interactively
  ☆157Updated 3 years ago
• ewels / sra-explorer
  Web application to explore the Sequence Read Archive.
  ☆217Updated 3 months ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆89Updated 3 years ago
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆165Updated 3 weeks ago
• PMBio / peer
  A factor analysis package
  ☆102Updated 13 years ago
• hbctraining / Accessing_public_genomic_data
  Tutorials on accessing public reference and genomic data
  ☆30Updated 8 months ago
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆172Updated last year
• im3sanger / dndscv
  dN/dS methods to quantify selection in cancer and somatic evolution
  ☆226Updated 5 months ago
• showteeth / ggcoverage
  Visualize and annotate genomic coverage with ggplot2
  ☆264Updated 9 months ago
• broadinstitute / tensorqtl
  Ultrafast GPU-enabled QTL mapper
  ☆195Updated 4 months ago
• mskcc / facets
  Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
  ☆154Updated 2 years ago
• PGScatalog / pgsc_calc
  The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
  ☆150Updated 2 months ago
• al2na / methylKit
  R package for DNA methylation analysis
  ☆238Updated last month
• choishingwan / PRS-Tutorial
  A tutorial on how to run basic polygenic risk score analysis
  ☆82Updated 2 years ago
• jiabowang / GAPIT
  Genome Association Predict Integrate Tools
  ☆212Updated this week
• YuLab-SMU / enrichplot
  Visualization of Functional Enrichment Result
  ☆248Updated last week
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆138Updated 5 years ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆105Updated 4 years ago
• dzhang32 / ggtranscript
  Visualizing transcript structure and annotation using ggplot2
  ☆160Updated last year