Alternatives and similar repositories for gwas_scripts

Users that are interested in gwas_scripts are comparing it to the libraries listed below

• weizhouUMICH / SAIGE
  ☆194Updated 3 years ago
• JonJala / mtag
  Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
  ☆186Updated last year
• YuLab-SMU / ChIPseeker
  ChIP peak Annotation, Comparison and Visualization
  ☆234Updated last month
• YuLab-SMU / enrichplot
  Visualization of Functional Enrichment Result
  ☆243Updated last month
• choishingwan / PRSice
  A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
  ☆199Updated 9 months ago
• stephenturner / qqman
  An R package for creating Q-Q and manhattan plots from GWAS results
  ☆168Updated last year
• hbctraining / DGE_workshop_salmon
  ☆72Updated 3 years ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆85Updated 3 years ago
• chr1swallace / coloc
  Repo for the R package coloc
  ☆166Updated last month
• bernatgel / karyoploteR
  karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
  ☆314Updated last week
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆116Updated 5 months ago
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆84Updated 3 years ago
• h3abionet / h3agwas
  GWAS Pipeline for H3Africa
  ☆110Updated last week
• MRCIEU / gwasglue
  Linking GWAS data to analytical tools in R
  ☆137Updated 3 years ago
• jiabowang / GAPIT
  Genome Association Predict Integrate Tools
  ☆204Updated this week
• YaoLab-Bioinfo / shinyCircos
  an R/shiny application for creation of Circos plot interactively
  ☆157Updated 2 years ago
• davidaknowles / leafcutter
  Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …
  ☆215Updated last year
• ShixiangWang / sigminer
  🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…
  ☆152Updated 7 months ago
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆163Updated 2 years ago
• PMBio / peer
  A factor analysis package
  ☆100Updated 13 years ago
• boxiangliu / locuscomparer
  LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
  ☆115Updated 2 years ago
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆136Updated 5 years ago
• broadinstitute / tensorqtl
  Ultrafast GPU-enabled QTL mapper
  ☆180Updated 2 months ago
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆162Updated 7 months ago
• Cloufield / GWASTutorial
  GWAS Tutorial for Beginners
  ☆278Updated this week
• molgenis / systemsgenetics
  Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
  ☆173Updated 5 months ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆104Updated 3 years ago
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆121Updated 5 years ago
• cxli233 / SimpleTidy_GeneCoEx
  A simple gene co-expression analyses workflow powered by tidyverse and graph analyses
  ☆202Updated 10 months ago
• zhenin / HDL
  High-definition likelihood inference of genetic correlations (HDL)
  ☆114Updated last month