Alternatives and similar repositories for gwas_scripts

Users that are interested in gwas_scripts are comparing it to the libraries listed below

• weizhouUMICH / SAIGE
  ☆195Updated 3 years ago
• stephenturner / qqman
  An R package for creating Q-Q and manhattan plots from GWAS results
  ☆171Updated 2 months ago
• YuLab-SMU / ChIPseeker
  ChIP peak Annotation, Comparison and Visualization
  ☆247Updated 2 months ago
• molgenis / systemsgenetics
  Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
  ☆178Updated last year
• JonJala / mtag
  Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
  ☆200Updated 2 years ago
• bernatgel / karyoploteR
  karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
  ☆353Updated 7 months ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆91Updated 3 years ago
• h3abionet / h3agwas
  GWAS Pipeline for H3Africa
  ☆114Updated 7 months ago
• PMBio / peer
  A factor analysis package
  ☆104Updated 13 years ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆129Updated last year
• YaoLab-Bioinfo / shinyCircos
  an R/shiny application for creation of Circos plot interactively
  ☆158Updated 3 years ago
• choishingwan / PRSice
  A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
  ☆202Updated last year
• zhanxw / rvtests
  Rare variant test software for next generation sequencing data
  ☆141Updated 3 years ago
• freeseek / gtc2vcf
  Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF
  ☆162Updated 5 months ago
• choishingwan / PRS-Tutorial
  A tutorial on how to run basic polygenic risk score analysis
  ☆84Updated 2 years ago
• hbctraining / Accessing_public_genomic_data
  Tutorials on accessing public reference and genomic data
  ☆30Updated 11 months ago
• broadinstitute / tensorqtl
  Ultrafast GPU-enabled QTL mapper
  ☆200Updated 6 months ago
• im3sanger / dndscv
  dN/dS methods to quantify selection in cancer and somatic evolution
  ☆230Updated 8 months ago
• showteeth / ggcoverage
  Visualize and annotate genomic coverage with ggplot2
  ☆271Updated 11 months ago
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆175Updated last year
• dzhang32 / ggtranscript
  Visualizing transcript structure and annotation using ggplot2
  ☆165Updated last year
• al2na / methylKit
  R package for DNA methylation analysis
  ☆245Updated 4 months ago
• MRCIEU / gwasglue
  Linking GWAS data to analytical tools in R
  ☆150Updated 3 years ago
• chr1swallace / coloc
  Repo for the R package coloc
  ☆186Updated last month
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆105Updated 4 years ago
• statgen / pheweb
  A tool to build a website to browse hundreds or thousands of GWAS.
  ☆190Updated 4 months ago
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆87Updated 3 years ago
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆168Updated 6 months ago
• jiabowang / GAPIT
  Genome Association Predict Integrate Tools
  ☆217Updated last month
• jokergoo / EnrichedHeatmap
  make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
  ☆199Updated last year