Alternatives and similar repositories for gwas_scripts

Users that are interested in gwas_scripts are comparing it to the libraries listed below

• weizhouUMICH / SAIGE
  ☆193Updated 3 years ago
• JonJala / mtag
  Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
  ☆188Updated last year
• h3abionet / h3agwas
  GWAS Pipeline for H3Africa
  ☆110Updated last month
• stephenturner / qqman
  An R package for creating Q-Q and manhattan plots from GWAS results
  ☆169Updated last year
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆85Updated 3 years ago
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆84Updated 3 years ago
• choishingwan / PRSice
  A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
  ☆199Updated 10 months ago
• bernatgel / karyoploteR
  karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
  ☆317Updated 2 weeks ago
• YuLab-SMU / ChIPseeker
  ChIP peak Annotation, Comparison and Visualization
  ☆234Updated 2 months ago
• zhanxw / rvtests
  Rare variant test software for next generation sequencing data
  ☆139Updated 3 years ago
• YuLab-SMU / enrichplot
  Visualization of Functional Enrichment Result
  ☆246Updated last month
• hbctraining / DGE_workshop_salmon
  ☆72Updated 3 years ago
• PMBio / peer
  A factor analysis package
  ☆100Updated 13 years ago
• mhammell-laboratory / TEtranscripts
  A package for including transposable elements in differential enrichment analysis of sequencing datasets.
  ☆252Updated 4 months ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆116Updated 6 months ago
• jiabowang / GAPIT
  Genome Association Predict Integrate Tools
  ☆204Updated this week
• YaoLab-Bioinfo / shinyCircos
  an R/shiny application for creation of Circos plot interactively
  ☆157Updated 2 years ago
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆136Updated 5 years ago
• al2na / methylKit
  R package for DNA methylation analysis
  ☆232Updated 3 months ago
• chr1swallace / coloc
  Repo for the R package coloc
  ☆168Updated 2 months ago
• showteeth / ggcoverage
  Visualize and annotate genomic coverage with ggplot2
  ☆260Updated 5 months ago
• GenomicSEM / GenomicSEM
  R-package for structural equation modeling based on GWAS summary data
  ☆233Updated 2 weeks ago
• freeseek / gtc2vcf
  Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF
  ☆152Updated 4 months ago
• ShixiangWang / sigminer
  🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R htt…
  ☆153Updated 8 months ago
• BGI-shenzhen / LDBlockShow
  LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
  ☆180Updated last year
• MRCIEU / gwasglue
  Linking GWAS data to analytical tools in R
  ☆141Updated 3 years ago
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆162Updated 7 months ago
• im3sanger / dndscv
  dN/dS methods to quantify selection in cancer and somatic evolution
  ☆222Updated last month
• davidaknowles / leafcutter
  Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …
  ☆219Updated last year
• snakemake-workflows / dna-seq-gatk-variant-calling
  This Snakemake pipeline implements the GATK best-practices workflow
  ☆254Updated 2 years ago