Alternatives and similar repositories for gwas_scripts

Users that are interested in gwas_scripts are comparing it to the libraries listed below

• weizhouUMICH / SAIGE
  ☆195Updated 3 years ago
• stephenturner / qqman
  An R package for creating Q-Q and manhattan plots from GWAS results
  ☆171Updated 2 months ago
• h3abionet / h3agwas
  GWAS Pipeline for H3Africa
  ☆113Updated 7 months ago
• molgenis / systemsgenetics
  Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
  ☆177Updated last year
• YaoLab-Bioinfo / shinyCircos
  an R/shiny application for creation of Circos plot interactively
  ☆158Updated 3 years ago
• bernatgel / karyoploteR
  karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
  ☆350Updated 6 months ago
• YuLab-SMU / ChIPseeker
  ChIP peak Annotation, Comparison and Visualization
  ☆247Updated last month
• showteeth / ggcoverage
  Visualize and annotate genomic coverage with ggplot2
  ☆270Updated 11 months ago
• ewels / sra-explorer
  Web application to explore the Sequence Read Archive.
  ☆218Updated 5 months ago
• zhanxw / rvtests
  Rare variant test software for next generation sequencing data
  ☆141Updated 3 years ago
• JonJala / mtag
  Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
  ☆200Updated 2 years ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆91Updated 3 years ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆127Updated last year
• PMBio / peer
  A factor analysis package
  ☆104Updated 13 years ago
• freeseek / gtc2vcf
  Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF
  ☆162Updated 4 months ago
• davidaknowles / leafcutter
  Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …
  ☆226Updated last year
• TickingClock1992 / RIdeogram
  ☆190Updated 5 years ago
• jokergoo / EnrichedHeatmap
  make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
  ☆199Updated last year
• dzhang32 / ggtranscript
  Visualizing transcript structure and annotation using ggplot2
  ☆163Updated last year
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆105Updated 4 years ago
• im3sanger / dndscv
  dN/dS methods to quantify selection in cancer and somatic evolution
  ☆230Updated 7 months ago
• mskcc / facets
  Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
  ☆156Updated 2 years ago
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆165Updated 2 months ago
• davetang / learning_vcf_file
  Learning the Variant Call Format
  ☆148Updated 4 months ago
• hbctraining / Accessing_public_genomic_data
  Tutorials on accessing public reference and genomic data
  ☆30Updated 10 months ago
• choishingwan / PRSice
  A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
  ☆202Updated last year
• knausb / vcfR
  Tools to work with variant call format files
  ☆264Updated 2 months ago
• jiabowang / GAPIT
  Genome Association Predict Integrate Tools
  ☆217Updated 3 weeks ago
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆86Updated 3 years ago
• al2na / methylKit
  R package for DNA methylation analysis
  ☆244Updated 3 months ago