Alternatives and similar repositories for PRS-Tutorial

Users that are interested in PRS-Tutorial are comparing it to the libraries listed below

• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 4 years ago
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆85Updated 7 months ago
• hakyimlab / PrediXcan
  PrediXcan Project
  ☆112Updated 2 years ago
• qlu-lab / PUMAS
  Fine-tuning polygenic risk score models using GWAS summary statistics
  ☆52Updated 3 months ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆50Updated last month
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆76Updated last year
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆48Updated 2 months ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆76Updated this week
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆66Updated 8 months ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆116Updated 6 months ago
• opain / GenoPred
  Genotype-based Prediction (GenoPred)
  ☆72Updated this week
• pjgreer / ukb-rap-tools
  Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform
  ☆63Updated last week
• CBIIT / LDlinkR
  LDlinkR
  ☆59Updated last year
• meyer-lab-cshl / plinkQC
  R package for quality control of plink genetic datasets
  ☆59Updated 2 weeks ago
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆46Updated 3 weeks ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆45Updated last year
• bvilhjal / ldpred
  ☆98Updated 3 years ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆50Updated 4 months ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆85Updated 3 years ago
• PGScatalog / pgsc_calc
  The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
  ☆136Updated this week
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆31Updated last week
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆84Updated 3 years ago
• Al-Murphy / MungeSumstats
  Rapid standardisation and quality control of GWAS or QTL summary statistics
  ☆81Updated this week
• eskederks / eMAGMA-tutorial
  A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
  ☆67Updated 4 years ago
• joepickrell / gwas-pw
  Pariwise analysis of GWAS
  ☆43Updated 6 years ago
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆53Updated 4 years ago
• Annefeng / PBK-QC-pipeline
  Partners Biobank genomics data QC
  ☆26Updated 5 years ago
• xihaoli / STAARpipeline
  An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
  ☆64Updated 3 months ago
• clagiamba / moloc
  ☆35Updated 4 years ago
• choishingwan / PRSice
  A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
  ☆199Updated 10 months ago