A tutorial on how to run basic polygenic risk score analysis
☆90Jan 24, 2023Updated 3 years ago
Alternatives and similar repositories for PRS-Tutorial
Users that are interested in PRS-Tutorial are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores☆208Apr 10, 2026Updated 3 months ago
- Script to calculate polygenic risk scores in a genotyped sample using GWAS summary statistics from a disease/trait.☆19Apr 17, 2018Updated 8 years ago
- Fine-tuning polygenic risk score models using GWAS summary statistics☆56Oct 19, 2025Updated 9 months ago
- LASSO for GWAS with summary statistics☆79Sep 24, 2020Updated 5 years ago
- Cross-population weighting framework to improve genetic risk prediction in ancestrally diverse populations☆18Feb 19, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆10Jul 2, 2024Updated 2 years ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆54Feb 1, 2019Updated 7 years ago
- KCL Interface to UKB Project Data on Rosalind HPC cluster☆14Apr 22, 2023Updated 3 years ago
- A list of cool software for genetic analysis and the like☆12Sep 21, 2018Updated 7 years ago
- The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation☆171Jun 3, 2026Updated last month
- Generating polygenic risk scores in UK Biobank (University of Bristol)☆16Aug 14, 2020Updated 5 years ago
- Polygenic prediction via continuous shrinkage priors☆209Nov 21, 2024Updated last year
- Codebook from my GWAS cookbook☆196May 26, 2022Updated 4 years ago
- A comprehensive tutorial about GWAS and PRS☆1,009Apr 1, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code used for the GWAS-by-subtraction of non-cognitive skills and follow-up analyses☆22Jan 15, 2021Updated 5 years ago
- Software for estimating correlation of trait effect sizes across populations☆59May 30, 2025Updated last year
- Genotype-based Prediction (GenoPred)☆78Jun 24, 2026Updated 3 weeks ago
- GWAS Summary Statistics Data Harmonisation☆29Jun 24, 2026Updated 3 weeks ago
- Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release☆392Jun 7, 2023Updated 3 years ago
- Notes and code for running UK Biobank GWAS at the MRC IEU☆19Jul 18, 2024Updated 2 years ago
- Documentation on new GWAS Summary Statistics Standard☆25Jun 26, 2026Updated 3 weeks ago
- Scripts for running a sibling GWAS☆16Mar 16, 2022Updated 4 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Mar 22, 2019Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Scripts used for generating Neale Lab UKB results☆19Oct 11, 2022Updated 3 years ago
- This repository holds code associated with the publication titled: "Identifying typical trajectories in longitudinal data: modelling stra…☆20Nov 17, 2020Updated 5 years ago
- Effects of Adherence to Mediterranean and MIND Diets, and the Mediating Effect of Metabolites on Risks of Overall and 22 Specific Cancers…☆14Apr 10, 2024Updated 2 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Jan 31, 2024Updated 2 years ago
- Statistical properties of polygenic risk scores☆19Oct 16, 2019Updated 6 years ago
- LD Score Regression (LDSC)☆792Jan 16, 2026Updated 6 months ago
- An R package to manipulate and explore UK Biobank data☆111Feb 22, 2023Updated 3 years ago
- Targeted Amplicon Bisulfite Sequencing Analysis Tool☆11May 8, 2019Updated 7 years ago
- ☆56Jan 16, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Non-linear Mendelian randomization☆56Jan 4, 2024Updated 2 years ago
- ☆12Jan 9, 2023Updated 3 years ago
- ☆21Nov 15, 2024Updated last year
- TWAS-pipeline☆24Feb 21, 2021Updated 5 years ago
- Code utilized in the paper "A phenome-wide association and Mendelian randomization study for Alzheimer's disease: a prospective cohort st…☆14Jun 10, 2022Updated 4 years ago
- ☆11Jan 30, 2025Updated last year
- Pariwise analysis of GWAS☆47Sep 27, 2018Updated 7 years ago