A tutorial on how to run basic polygenic risk score analysis
☆84Jan 24, 2023Updated 3 years ago
Alternatives and similar repositories for PRS-Tutorial
Users that are interested in PRS-Tutorial are comparing it to the libraries listed below
Sorting:
- A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores☆202Aug 21, 2024Updated last year
- Fine-tuning polygenic risk score models using GWAS summary statistics☆54Oct 19, 2025Updated 4 months ago
- Script to calculate polygenic risk scores in a genotyped sample using GWAS summary statistics from a disease/trait.☆19Apr 17, 2018Updated 7 years ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆53Feb 1, 2019Updated 7 years ago
- The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation☆157Dec 11, 2025Updated 2 months ago
- LASSO for GWAS with summary statistics☆78Sep 24, 2020Updated 5 years ago
- Code used for the GWAS-by-subtraction of non-cognitive skills and follow-up analyses☆20Jan 15, 2021Updated 5 years ago
- Generating polygenic risk scores in UK Biobank (University of Bristol)☆16Aug 14, 2020Updated 5 years ago
- Polygenic Risk Scores Pipeline to calculate genetic risk score for any given phenotype/trait (using PRSice)☆11Mar 30, 2023Updated 2 years ago
- Polygenic prediction via continuous shrinkage priors☆198Nov 21, 2024Updated last year
- Documentation on new GWAS Summary Statistics Standard☆23Nov 19, 2025Updated 3 months ago
- ☆10Jul 2, 2024Updated last year
- A comprehensive tutorial about GWAS and PRS☆969Apr 1, 2023Updated 2 years ago
- GWAS Summary Statistics Data Harmonisation☆25Jan 7, 2026Updated last month
- Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release☆382Jun 7, 2023Updated 2 years ago
- Cross-population weighting framework to improve genetic risk prediction in ancestrally diverse populations☆16Feb 19, 2026Updated last week
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Mar 22, 2019Updated 6 years ago
- Codebook from my GWAS cookbook☆193May 26, 2022Updated 3 years ago
- Notes and code for running UK Biobank GWAS at the MRC IEU☆18Jul 18, 2024Updated last year
- Genotype-based Prediction (GenoPred)☆77Feb 20, 2026Updated last week
- A list of cool software for genetic analysis and the like☆12Sep 21, 2018Updated 7 years ago
- Scripts used for generating Neale Lab UKB results☆21Oct 11, 2022Updated 3 years ago
- Statistical properties of polygenic risk scores☆19Oct 16, 2019Updated 6 years ago
- Software for estimating correlation of trait effect sizes across populations☆54May 30, 2025Updated 9 months ago
- SCALLOP-INF analysis☆20Oct 24, 2025Updated 4 months ago
- Effects of Adherence to Mediterranean and MIND Diets, and the Mediating Effect of Metabolites on Risks of Overall and 22 Specific Cancers…☆13Apr 10, 2024Updated last year
- ☆21Nov 15, 2024Updated last year
- LocusCompare is an interactive visualization tool for comparing two genetic association datasets.☆21Apr 8, 2023Updated 2 years ago
- LD Score Regression (LDSC)☆763Jan 16, 2026Updated last month
- KCL Interface to UKB Project Data on Rosalind HPC cluster☆14Apr 22, 2023Updated 2 years ago
- LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.☆28Jul 30, 2025Updated 7 months ago
- A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.☆72Feb 4, 2021Updated 5 years ago
- An R package to manipulate and explore UK Biobank data☆108Feb 22, 2023Updated 3 years ago
- An R package to create forestplots of measures of effects with their confidence intervals.☆63May 7, 2021Updated 4 years ago
- R package for performing Mendelian Randomization using mixture models☆25Jan 27, 2020Updated 6 years ago
- ☆12Jan 9, 2023Updated 3 years ago
- PRSKB is a website and command-line interface tool for calculating polygenic risk scores using GWA studies from the NHGRI-EBI Catalog.☆30Aug 22, 2024Updated last year
- ☆102Jun 26, 2022Updated 3 years ago
- TWAS-pipeline☆24Feb 21, 2021Updated 5 years ago