variani / finemaprLinks
Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
☆31Updated last month
Alternatives and similar repositories for finemapr
Users that are interested in finemapr are comparing it to the libraries listed below
Sorting:
- Colocalization analysis of genetic association signals☆52Updated last month
- ☆35Updated 4 years ago
- Visualization of Colocalization Between eQTL and GWAS Data☆84Updated 3 years ago
- An R package for creating mirrored Manhattan plots☆18Updated 2 years ago
- Make LocusZoom-like plots with your own LD matrix.☆43Updated 3 years ago
- Regional association plots☆25Updated last year
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆67Updated 9 months ago
- methods for functional summary-based imputation☆85Updated 3 years ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆51Updated 2 months ago
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 4 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆45Updated last year
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42Updated 7 years ago
- S-LDSC scripts for use on MR server.☆10Updated 3 years ago
- ☆33Updated 2 years ago
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆32Updated 3 years ago
- A collection of various utilities for GWAS summary statistics☆28Updated last year
- LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.☆115Updated 2 years ago
- ☆48Updated last month
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆27Updated last week
- R script to make Manhattan-style plot for TWAS☆38Updated 3 years ago
- Manhattan++☆28Updated last year
- ☆57Updated 6 months ago
- Mediated Expression Score Regression (MESC)☆26Updated 3 years ago
- GWAS Summary Statistics Data Harmonisation☆23Updated 3 weeks ago
- Software for estimating correlation of trait effect sizes across populations☆47Updated last month
- Quality control steps for GWAS☆24Updated last year
- R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data☆54Updated 4 years ago
- causal TWAS (cTWAS)☆44Updated 2 weeks ago
- Scripts to run mQTL analyses as described in the ARIES mQTL paper☆9Updated 9 years ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆38Updated 2 years ago