variani / finemaprLinks
Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
☆35Updated 5 months ago
Alternatives and similar repositories for finemapr
Users that are interested in finemapr are comparing it to the libraries listed below
Sorting:
- Make LocusZoom-like plots with your own LD matrix.☆47Updated 3 years ago
- Software for estimating correlation of trait effect sizes across populations☆50Updated 5 months ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆59Updated 3 weeks ago
- Colocalization analysis of genetic association signals☆53Updated 5 months ago
- Visualization of Colocalization Between eQTL and GWAS Data☆86Updated 3 years ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆69Updated last year
- Regional association plots☆25Updated last year
- An R package for creating mirrored Manhattan plots☆18Updated 3 years ago
- Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.☆41Updated 2 years ago
- ☆37Updated 4 years ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆47Updated 2 years ago
- Fast, integrative fine mapping with functional data☆61Updated 6 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42Updated 7 years ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆51Updated 8 months ago
- methods for functional summary-based imputation☆90Updated 3 years ago
- Manhattan++☆28Updated last year
- Quality control steps for GWAS☆25Updated 2 years ago
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆31Updated last year
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 4 years ago
- An R package for performing STAAR procedure in whole-genome sequencing studies☆95Updated 9 months ago
- ☆63Updated 3 years ago
- Enhanced version of the FastQTL QTL mapper☆70Updated 2 years ago
- R script to make Manhattan-style plot for TWAS☆41Updated 4 years ago
- Cross-population fine-mapping☆39Updated 11 months ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆36Updated last year
- Genotype-based Prediction (GenoPred)☆75Updated 2 weeks ago
- ☆16Updated 4 years ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆47Updated 2 weeks ago
- corrplot of LDSC genetic correlation results☆56Updated 3 years ago
- ☆57Updated 10 months ago