Alternatives and similar repositories for gwasglue:

Users that are interested in gwasglue are comparing it to the libraries listed below

• chr1swallace / coloc
  Repo for the R package coloc
  ☆158Updated last month
• boxiangliu / locuscomparer
  LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
  ☆109Updated 2 years ago
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆78Updated 2 years ago
• rondolab / MR-PRESSO
  Performs the Mendelian Randomization Pleiotropy RESidual Sum and Outlier (MR-PRESSO) method.
  ☆87Updated last year
• Al-Murphy / MungeSumstats
  Rapid standardisation and quality control of GWAS or QTL summary statistics
  ☆78Updated last month
• MRCIEU / ieugwasr
  R interface to the IEU GWAS database API
  ☆87Updated 4 months ago
• zhenin / HDL
  High-definition likelihood inference of genetic correlations (HDL)
  ☆101Updated this week
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆97Updated last month
• cran / MendelianRandomization
   This is a read-only mirror of the CRAN R package repository. MendelianRandomization — Mendelian Randomization Package
  ☆44Updated 9 months ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆78Updated 2 years ago
• PoisonAlien / TCGAmutations
  R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE
  ☆90Updated 3 months ago
• weizhouUMICH / SAIGE
  ☆193Updated 2 years ago
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆74Updated last year
• MRCIEU / gwasvcf
  Reading, querying and writing GWAS summary data in VCF format
  ☆73Updated 8 months ago
• neurogenomics / MAGMA_Celltyping
  Find causal cell-types underlying complex trait genetics
  ☆77Updated 3 months ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 3 years ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆48Updated 3 months ago
• CBIIT / LDlinkR
  LDlinkR
  ☆57Updated 9 months ago
• JoniColeman / gwas_scripts
  Codebook from my GWAS cookbook
  ☆189Updated 2 years ago
• ramiromagno / gwasrapidd
  gwasrapidd: an R package to query, download and wrangle GWAS Catalog data
  ☆95Updated last year
• clagiamba / moloc
  ☆34Updated 3 years ago
• Olink-Proteomics / OlinkRPackage
  Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users…
  ☆100Updated this week
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆29Updated last year
• jrs95 / hyprcoloc
  Hypothesis Prioritisation in multi-trait Colocalization
  ☆50Updated 9 months ago
• statgen / METAL
  Meta-analysis of genomewide association scans
  ☆50Updated 6 months ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆54Updated 3 months ago
• astheeggeggs / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆18Updated 2 years ago
• pwwang / scplotter
  scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…
  ☆135Updated this week
• eskederks / eMAGMA-tutorial
  A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
  ☆63Updated 3 years ago
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆76Updated last month