Alternatives and similar repositories for SAIGE:

Users that are interested in SAIGE are comparing it to the libraries listed below

• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆50Updated 5 months ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 3 years ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆47Updated last month
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆81Updated 2 years ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆31Updated last year
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆78Updated 4 months ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆58Updated 5 months ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆64Updated 2 years ago
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆44Updated 2 years ago
• clagiamba / moloc
  ☆34Updated 4 years ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆105Updated 3 months ago
• xihaoli / STAARpipeline
  An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
  ☆63Updated last week
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆44Updated last year
• rivas-lab / public-resources
  Repository for resources we'd like to share with the community.
  ☆24Updated 3 years ago
• StatFunGen / xqtl-protocol
  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
  ☆43Updated this week
• FinucaneLab / pops
  ☆76Updated 2 years ago
• immunogenomics / HLA-TAPAS
  HLA-TAPAS pipeline for HLA association and fine-mapping studies
  ☆51Updated last year
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆51Updated 4 months ago
• opain / GenoPred
  Genotype-based Prediction (GenoPred)
  ☆72Updated this week
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆57Updated 5 years ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆46Updated 3 weeks ago
• andreyshabalin / MatrixEQTL
  Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
  ☆77Updated last year
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆47Updated last week
• Geeketics / LocusZooms
  Make LocusZoom-like plots with your own LD matrix.
  ☆39Updated 2 years ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆34Updated 3 months ago
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆20Updated last year
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆82Updated 2 years ago
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆76Updated last year
• neurogenetics / GWAS-pipeline
  This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GW…
  ☆41Updated 2 years ago
• fauman / EGEA
  Every Gene Ever Annotated in published GWAS
  ☆47Updated 2 years ago