Development for SAIGE and SAIGE-GENE(+)
☆90Feb 12, 2026Updated last month
Alternatives and similar repositories for SAIGE
Users that are interested in SAIGE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆196May 2, 2022Updated 3 years ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆35Dec 5, 2025Updated 3 months ago
- Phenome Exome Association and Correlation Of Key phenotypes☆35Aug 19, 2021Updated 4 years ago
- Fork of ricopili for development of pipeline for family-based data☆19Jun 22, 2025Updated 9 months ago
- Workflow for performing cistrome-wide associations studies☆11Jul 25, 2022Updated 3 years ago
- regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.☆256Nov 13, 2025Updated 4 months ago
- ☆16Sep 14, 2023Updated 2 years ago
- Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies☆11Sep 1, 2022Updated 3 years ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆16Mar 17, 2026Updated last week
- ☆14Sep 24, 2024Updated last year
- EXpression PREdiction with Summary Statistics Only☆13Dec 10, 2025Updated 3 months ago
- Stratified squared trans-ethnic genetic correlation☆14May 12, 2022Updated 3 years ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Jun 27, 2023Updated 2 years ago
- A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.☆73Feb 4, 2021Updated 5 years ago
- Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)☆10Jan 26, 2026Updated last month
- Cross-population polygenic prediction☆101Nov 13, 2025Updated 4 months ago
- PredictDB Pipeline for GTEx v7 data☆18Nov 9, 2022Updated 3 years ago
- An R package for performing MultiSTAAR procedure in whole-genome sequencing studies☆11Nov 14, 2024Updated last year
- ☆18Oct 23, 2025Updated 5 months ago
- RSparsePro for robust fine-mapping in the presence of LD mismatch☆15Nov 4, 2024Updated last year
- ☆40Jan 13, 2026Updated 2 months ago
- ☆21Sep 12, 2025Updated 6 months ago
- Finding cryptic relationships to boost disease gene detection☆12May 31, 2023Updated 2 years ago
- Statistical fine-mapping pipeline in FinnGen☆32Oct 3, 2025Updated 5 months ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆35Sep 26, 2024Updated last year
- FOCUS: Fine-mapping Of CaUsal gene Sets☆48Aug 30, 2023Updated 2 years ago
- A GPU version of SAIGE for full GRM GWAS analysis☆19Aug 6, 2025Updated 7 months ago
- ☆12Sep 20, 2024Updated last year
- user-friendly pipeline for GWAS fine-mapping☆12Mar 9, 2025Updated last year
- A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/☆283Mar 18, 2026Updated last week
- Ascertained Sequentially Markovian Coalescent☆16Oct 22, 2025Updated 5 months ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆73Feb 1, 2026Updated last month
- An R package for creating ggplot2 based miami plots.☆18Mar 7, 2025Updated last year
- Tests Allelic Expression data for extreme imbalance w.r.t. population☆11Oct 8, 2021Updated 4 years ago
- xQTLbiolinks: an R package for integrative analysis with xQTL data☆17Jan 29, 2026Updated last month
- BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium☆11Jan 7, 2024Updated 2 years ago
- QTL Discovery using Annotations☆29Dec 12, 2022Updated 3 years ago
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Mar 24, 2023Updated 3 years ago
- ☆19Aug 7, 2025Updated 7 months ago