saigegit / SAIGELinks
Development for SAIGE and SAIGE-GENE(+)
☆85Updated last month
Alternatives and similar repositories for SAIGE
Users that are interested in SAIGE are comparing it to the libraries listed below
Sorting:
- Sequence kernel association test (SKAT)☆54Updated 4 months ago
- Enhanced version of the FastQTL QTL mapper☆71Updated 2 years ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆89Updated 2 years ago
- Software for estimating correlation of trait effect sizes across populations☆53Updated 7 months ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆62Updated 2 months ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆57Updated 3 months ago
- Fast, integrative fine mapping with functional data☆61Updated 6 years ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆71Updated 3 weeks ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Updated 2 years ago
- ☆63Updated 4 years ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆47Updated 3 weeks ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆44Updated last year
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆69Updated 9 months ago
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 4 years ago
- methods for functional summary-based imputation☆91Updated 3 years ago
- Colocalization analysis of genetic association signals☆53Updated 6 months ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆52Updated 9 months ago
- Genotype-based Prediction (GenoPred)☆76Updated 2 weeks ago
- FOCUS: Fine-mapping Of CaUsal gene Sets☆48Updated 2 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆35Updated 6 months ago
- PolyFun (POLYgenic FUNctionally-informed fine-mapping)☆128Updated last year
- Functional genomics and genome-wide association studies☆69Updated 7 years ago
- Cross-population polygenic prediction☆96Updated last month
- ☆87Updated 5 months ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆76Updated 2 months ago
- Mediated Expression Score Regression (MESC)☆27Updated last month
- Fuji plot—a circos representation of multiple GWAS results—☆92Updated 7 months ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆12Updated 8 months ago
- ☆40Updated 7 years ago
- ☆27Updated 5 years ago