saigegit / SAIGELinks
Development for SAIGE and SAIGE-GENE(+)
☆82Updated this week
Alternatives and similar repositories for SAIGE
Users that are interested in SAIGE are comparing it to the libraries listed below
Sorting:
- Sequence kernel association test (SKAT)☆52Updated last month
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆54Updated last year
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆68Updated 11 months ago
- ☆62Updated 3 years ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆53Updated 4 months ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆51Updated this week
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆85Updated last year
- Software for estimating correlation of trait effect sizes across populations☆49Updated 3 months ago
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆67Updated 5 months ago
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 4 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆33Updated 3 months ago
- Fast, integrative fine mapping with functional data☆60Updated 6 years ago
- Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper☆41Updated 9 months ago
- Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium☆47Updated last week
- Colocalization analysis of genetic association signals☆54Updated 3 months ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆74Updated 6 months ago
- methods for functional summary-based imputation☆88Updated 3 years ago
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆49Updated 6 months ago
- Genotype-based Prediction (GenoPred)☆73Updated this week
- causal TWAS (cTWAS)☆45Updated last month
- ☆40Updated 7 years ago
- Cross-population fine-mapping☆37Updated 9 months ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 6 years ago
- Quality control steps for GWAS☆24Updated 2 years ago
- ☆98Updated 3 years ago
- Every Gene Ever Annotated in published GWAS☆48Updated 2 years ago
- Cross-population polygenic prediction☆90Updated 9 months ago
- MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…☆11Updated 5 months ago
- Fuji plot—a circos representation of multiple GWAS results—☆91Updated 3 months ago