LungCellAtlas / HLCALinks
☆65Updated 2 years ago
Alternatives and similar repositories for HLCA
Users that are interested in HLCA are comparing it to the libraries listed below
Sorting:
- R package for pathway analysis in scRNA-seq data☆76Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆81Updated 7 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆90Updated 5 months ago
- ☆47Updated 3 weeks ago
- A unified interface to spatial transcriptomics deconvolution tools☆45Updated last week
- Gene group activity utility functions for Scanpy☆95Updated 10 months ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago
- ☆36Updated 3 weeks ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆56Updated 2 years ago
- Unified access to several second-generation deconvolution methods☆87Updated 2 weeks ago
- R package for semi-supervised single-cell data integration☆90Updated 3 months ago
- ☆41Updated 4 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated 2 weeks ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆131Updated 3 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 11 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆79Updated 9 months ago
- ☆46Updated 3 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 5 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆81Updated 3 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆66Updated 2 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆74Updated last week
- scGSVA: Perform GSVA for single cell RNA seq☆67Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆115Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 4 months ago
- Pan-Cancer Single Cell Classifier☆81Updated last year
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆93Updated last month
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆57Updated 2 weeks ago
- software to detect doublets☆95Updated 10 months ago
- Analysis of cell-cell communication at single-cell resolution☆105Updated last year
- ☆63Updated 5 years ago