☆66Jun 7, 2023Updated 2 years ago
Alternatives and similar repositories for HLCA
Users that are interested in HLCA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository contains all code used for the Human Lung Cell Atlas project.☆60Aug 21, 2023Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆41Jan 6, 2021Updated 5 years ago
- Repository to perform mapping of new datasets to the Human Lung Cell Atlas.☆20Jun 7, 2023Updated 2 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆83Feb 17, 2025Updated last year
- Variational Estimation of Latent Velocity from Expression with Time-resolution☆13May 30, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Raw data and analysis of scRNA Seq experiments for the paper Multimodal Mapping of the Immune Landscape in Human Pancreatic Cancer. This …☆15Nov 30, 2020Updated 5 years ago
- Conveniently process a dictionary of anndatas☆23Apr 17, 2026Updated 2 weeks ago
- SIMBA: SIngle-cell eMBedding Along with features☆20Jan 6, 2026Updated 3 months ago
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆14Dec 5, 2025Updated 4 months ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Oct 6, 2021Updated 4 years ago
- Reference mapping for single-cell genomics☆404Mar 21, 2026Updated last month
- ☆14Oct 11, 2019Updated 6 years ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆33Jul 13, 2024Updated last year
- Reproducing result from the paper☆34May 12, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 9 months ago
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆245Mar 14, 2026Updated last month
- Publication Page for ArchR Manuscript 2020☆23Aug 17, 2021Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆49Feb 9, 2024Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆41Nov 18, 2021Updated 4 years ago
- ☆31Aug 4, 2023Updated 2 years ago
- ☆47Jan 28, 2026Updated 3 months ago
- ☆42Jan 12, 2026Updated 3 months ago
- ☆47Jan 26, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆20May 20, 2021Updated 4 years ago
- ☆48Apr 18, 2020Updated 6 years ago
- Framework for integrating heterogeneous modalities of data☆17Sep 17, 2022Updated 3 years ago
- Initial recommendations for performing, benchmarking, and reporting single-cell proteomics experiments. The code is distributed under an …☆12Apr 5, 2023Updated 3 years ago
- ☆10Sep 26, 2019Updated 6 years ago
- A repository of case studies using ProjecTILs☆15Jul 26, 2024Updated last year
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆14Jul 5, 2023Updated 2 years ago
- Benchmarking analysis of data integration tools☆413Updated this week
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Fit Gamma-Poisson Generalized Linear Models Reliably☆121Mar 17, 2025Updated last year
- Simple scVI implementation☆12Updated this week
- Single-cell perturbation analysis☆309Updated this week
- R and MATLAB scripts for MAGICAL☆11Jun 26, 2024Updated last year
- Python package for Probe set selection for targeted spatial transcriptomics.☆48Nov 8, 2025Updated 5 months ago
- Efficient retrieval, download, and unification of genomic data from leading biodiversity databases☆18Apr 25, 2026Updated last week
- ☆14Jan 24, 2024Updated 2 years ago