YingMa0107 / IRISLinks
Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
☆36Updated 5 months ago
Alternatives and similar repositories for IRIS
Users that are interested in IRIS are comparing it to the libraries listed below
Sorting:
- ☆30Updated 4 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆54Updated 2 months ago
- ☆45Updated last year
- Spatial Cellular Estimator for Tumors☆53Updated last month
- Gene group activity utility functions for Scanpy☆79Updated 6 months ago
- Spatial direct messaging detected by bivariate Moran☆27Updated this week
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- The benchmarking of spatial transcriptomics deconvolution methods☆32Updated 2 years ago
- CAST package☆40Updated 8 months ago
- ☆28Updated 4 months ago
- ☆20Updated 3 months ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆13Updated last year
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆26Updated 8 months ago
- R implementation of GeneTrajectory☆59Updated last year
- ☆54Updated 11 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆39Updated 2 weeks ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 9 months ago
- Publically accessible code for DIISCO method☆12Updated 8 months ago
- Single-Cell Inference of Class Switch Recombination☆19Updated 3 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆74Updated 2 years ago
- ☆48Updated last month
- ☆25Updated last month
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- scTM: A package for topic modelling in transcriptomics data☆20Updated last year
- ☆18Updated 2 weeks ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 6 months ago
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆12Updated 9 months ago
- ☆14Updated last month
- SenePy is a set of tools to score single-cells based on their expression of cell-specific senescence markers. Please see the following pu…☆38Updated 5 months ago
- Construct Tumor Transition Zone Microenvironment☆46Updated 2 weeks ago