YingMa0107 / IRISLinks
Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
☆39Updated 8 months ago
Alternatives and similar repositories for IRIS
Users that are interested in IRIS are comparing it to the libraries listed below
Sorting:
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆56Updated 5 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- ☆31Updated 8 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆13Updated last year
- Spatial Cellular Estimator for Tumors☆58Updated 2 weeks ago
- ☆59Updated 4 months ago
- ☆31Updated 3 months ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆52Updated 9 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆22Updated 4 months ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆81Updated 2 years ago
- Construct Tumor Transition Zone Microenvironment☆49Updated 4 months ago
- Spatial direct messaging detected by bivariate Moran☆30Updated 3 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆78Updated 6 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated last year
- The benchmarking of spatial transcriptomics deconvolution methods☆33Updated 2 years ago
- Publically accessible code for DIISCO method☆12Updated last week
- ☆30Updated 5 months ago
- ☆50Updated 2 weeks ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆28Updated last year
- R implementation of GeneTrajectory☆65Updated last year
- Detect hierarchical structures in cell-cell communications☆15Updated 9 months ago
- ☆45Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated 2 months ago
- Gene group activity utility functions for Scanpy☆93Updated 10 months ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆61Updated last month
- Aligning gene expression trajectories of single-cell reference and query systems☆76Updated 2 months ago
- Unsupervised Inference of Developmental Directions for Single Cells☆22Updated last year
- ☆44Updated 2 months ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 8 months ago