ZhenyiWangTHU / HemaScopeRLinks
a user-friendly and modular design R package tailored for analyzing single-cell and spatial transcriptome sequencing data of hematopoietic cells
☆18Updated 3 months ago
Alternatives and similar repositories for HemaScopeR
Users that are interested in HemaScopeR are comparing it to the libraries listed below
Sorting:
- The scripts used for analyzing JAX mouse dataset☆25Updated 8 months ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆13Updated 2 years ago
- R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.☆15Updated this week
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Junction centric alternative splicing translator☆19Updated 2 years ago
- ☆10Updated last month
- ☆21Updated 3 years ago
- A tissue-specific single-cell biological age model☆11Updated last year
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 4 years ago
- ☆39Updated 3 years ago
- ☆15Updated 3 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆22Updated 4 years ago
- The scripts used for the analyses in TOME project☆24Updated 7 months ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last month
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆25Updated 2 years ago
- Pseudotime Analysis for Bulk Data☆15Updated 11 months ago
- Tumor Immune Single-cell Hub☆21Updated 4 years ago
- The R Bioconductor package for scMAGeCK.☆13Updated last year
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆33Updated last month
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 3 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 4 months ago
- ☆47Updated 6 months ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆36Updated 3 months ago
- ☆47Updated last year
- Inference of TCR motifs☆32Updated last month
- Supporting data files and code for the publication by Shilts et al.☆31Updated 2 years ago
- A collection of bioinformatics data analysis notebooks focused on providing examples of current best practices in sequencing data analysi…☆13Updated 3 weeks ago
- Tools for metabolomic data☆32Updated 9 months ago