greenelab / BioBombe
BioBombe: Sequentially compressed gene expression features enhances biological signatures
☆65Updated 9 months ago
Alternatives and similar repositories for BioBombe:
Users that are interested in BioBombe are comparing it to the libraries listed below
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆26Updated last month
- CAusal Reasoning for Network Identification with integer VALue programming in R☆59Updated last year
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆57Updated last year
- A repository for sharing information on available COVID-19 RNA-Seq datasets☆78Updated 3 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆47Updated last week
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆88Updated 3 years ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 3 years ago
- MultiMAP for integration of single cell multi-omics☆55Updated last year
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 2 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆86Updated 5 years ago
- Multi-omics studies are available here☆51Updated 2 years ago
- Deep Learning based cell composition analysis with Scaden.☆76Updated 5 months ago
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆53Updated this week
- Single-Cell Clustering Assessment Framework☆101Updated last year
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆105Updated last year
- ☆76Updated 3 years ago
- This contains the dataset for comparing scRNA-seq analysis methods☆92Updated 4 years ago
- Knowledge-primed neural networks☆36Updated 2 years ago
- ☆42Updated 5 months ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆81Updated 7 months ago
- Visualization and analysis platform for metabolic data and network pattern recognition☆39Updated 3 weeks ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆116Updated 7 months ago
- Tabula Muris Senis☆100Updated last year
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆36Updated 5 years ago
- User-submitted RNA-seq data analysis tools for BioJupies.☆20Updated 4 years ago