greenelab / BioBombeLinks
BioBombe: Sequentially compressed gene expression features enhances biological signatures
☆65Updated 11 months ago
Alternatives and similar repositories for BioBombe
Users that are interested in BioBombe are comparing it to the libraries listed below
Sorting:
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆32Updated 2 months ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆88Updated 3 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆59Updated last year
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆11Updated 2 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆48Updated 3 weeks ago
- Multi-omics studies are available here☆51Updated 2 years ago
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆54Updated last week
- ☆43Updated 7 months ago
- Single-cell Hierarchical Poisson Factorization☆70Updated 2 years ago
- ☆77Updated 3 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆59Updated last year
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆53Updated 9 months ago
- A repository for sharing information on available COVID-19 RNA-Seq datasets☆78Updated 3 years ago
- MultiMAP for integration of single cell multi-omics☆56Updated last year
- Data and analysis for the Splatter paper☆29Updated 7 years ago
- ☆66Updated last year
- ☆22Updated 5 years ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 3 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Biological Network Integration using Convolutions☆62Updated last year
- Knowledge-primed neural networks☆37Updated 2 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆46Updated 4 years ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆48Updated 4 months ago