SystemsGenetics / gene-oracleLinks
Feature extraction algorithm for genomic data
☆15Updated 4 years ago
Alternatives and similar repositories for gene-oracle
Users that are interested in gene-oracle are comparing it to the libraries listed below
Sorting:
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆65Updated last year
- Python API for Xena Hub☆53Updated 2 years ago
- Python code for genetic marker selection using linear programming☆42Updated last year
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- Simple and efficient access to genomic data for deep learning models.☆42Updated 5 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆82Updated last year
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆36Updated 7 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆26Updated 8 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Flexible Integration of Data with Deep LEarning☆51Updated 2 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- A python library for creating simulated regulatory DNA sequences☆39Updated 2 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆58Updated last year
- SevenBridges Python Api bindings☆46Updated 7 months ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated 2 years ago
- Deep learning based processing of Atac-seq data☆131Updated 2 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- deep learning toolkit (written on top of tensorflow) to streamline computational biology analysis☆22Updated 2 years ago
- User-submitted RNA-seq data analysis tools for BioJupies.☆20Updated 2 months ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 7 years ago
- ☆24Updated 3 years ago
- Deep learning for identifying cis-regulatory elements and other applications☆34Updated 8 years ago
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆94Updated 8 months ago
- Downloader for ENCODE☆32Updated 5 years ago
- examples to run monorail externally☆17Updated 10 months ago
- Group lasso based Deep Neural Network for Cancer Prognosis☆15Updated 5 years ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆86Updated 3 weeks ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆25Updated 6 years ago