xuebaliang / scAnCluster
Single-cell RNA-seq clustering and annotation
☆13Updated 4 years ago
Alternatives and similar repositories for scAnCluster:
Users that are interested in scAnCluster are comparing it to the libraries listed below
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Updated 2 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- The source code and results for different methods on annotating external testing datsets of human and mouse.☆12Updated 3 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆11Updated 4 years ago
- ☆21Updated 9 months ago
- Python framework for single-cell RNA-seq clustering with special focus on transfer learning.☆18Updated 5 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 3 years ago
- Novel joint clustering method with scRNA-seq and CITE-seq data☆9Updated 3 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆24Updated last year
- Nonnegative spatial factorization for multivariate count data☆57Updated last year
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆14Updated 3 years ago
- scLearn:Learning for single cell assignment☆35Updated 3 months ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆21Updated 3 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆38Updated 6 months ago
- Reproducing result from the paper☆33Updated 3 years ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆17Updated 4 years ago
- Simultaneous deep generative modeling and clustering of single cell genomic data☆32Updated 2 years ago
- ☆14Updated 2 years ago
- ☆16Updated 2 years ago
- ☆28Updated 3 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Updated 2 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- Imputation of single cell sequencing data☆9Updated 4 years ago
- ☆45Updated 2 years ago
- ☆42Updated 3 weeks ago
- A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques☆15Updated 3 years ago
- SoptSC for single cell data analysis: unsupervised inference of clustering, cell lineage, pseudotime and cell-cell communication network …☆21Updated 4 years ago
- Methods for visualization and analysis of spatially-resolved gene expression☆17Updated this week
- Python Implementation of SIMLR for single-cell visualization and analysis☆23Updated 2 years ago