ccagc / QDNAseqLinks
QDNAseq package for Bioconductor
☆52Updated last year
Alternatives and similar repositories for QDNAseq
Users that are interested in QDNAseq are comparing it to the libraries listed below
Sorting:
- ☆54Updated 2 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆74Updated last year
- ☆21Updated last month
- QDNAseq.hg38: QDNAseq bin annotation for hg38☆16Updated 3 weeks ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated last month
- ⛏ HLA predictions from NGS shotgun data☆55Updated 5 months ago
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- ☆46Updated 5 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 5 years ago
- Burden testing against public controls☆50Updated last year
- Tumor Mutational Burden☆63Updated 3 months ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆68Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Tools for analyzing DNA methylation data☆44Updated last week
- Concordance and contamination estimator for tumor–normal pairs☆58Updated last year
- R package for inferring copy number from read depth☆32Updated 3 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- CN-Learn☆30Updated 5 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated 2 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- ☆72Updated 2 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆74Updated 4 months ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- ☆38Updated 4 years ago