ccagc / QDNAseqLinks
QDNAseq package for Bioconductor
☆50Updated last year
Alternatives and similar repositories for QDNAseq
Users that are interested in QDNAseq are comparing it to the libraries listed below
Sorting:
- ☆53Updated 2 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated 11 months ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 4 months ago
- ☆46Updated 5 years ago
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- ☆21Updated last week
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- ⛏ HLA predictions from NGS shotgun data☆54Updated 2 months ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆66Updated 2 years ago
- Tumor Mutational Burden☆62Updated last week
- ☆39Updated last year
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- QDNAseq bin annotation for hg38☆16Updated 4 months ago
- CN-Learn☆29Updated 5 years ago
- Tools for analyzing DNA methylation data☆43Updated last week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 9 months ago
- Burden testing against public controls☆50Updated last year
- BISulfite-seq CUI Toolkit☆24Updated 2 months ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- ☆38Updated 4 years ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated 2 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆54Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- Concordance and contamination estimator for tumor–normal pairs☆60Updated 9 months ago