ccagc / QDNAseqLinks
QDNAseq package for Bioconductor
☆52Updated last year
Alternatives and similar repositories for QDNAseq
Users that are interested in QDNAseq are comparing it to the libraries listed below
Sorting:
- ☆54Updated 2 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆73Updated last year
- Concordance and contamination estimator for tumor–normal pairs☆58Updated last year
- QDNAseq bin annotation for hg38☆16Updated 6 months ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆68Updated 2 years ago
- ☆46Updated 5 years ago
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- ☆21Updated 2 weeks ago
- ⛏ HLA predictions from NGS shotgun data☆55Updated 4 months ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Tumor Mutational Burden☆61Updated 2 months ago
- Burden testing against public controls☆50Updated last year
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 4 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- CN-Learn☆30Updated 5 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆74Updated 3 months ago
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆41Updated 4 years ago
- ☆38Updated 4 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆52Updated 3 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated 2 weeks ago
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year