bcgsc / HLAminerLinks
⛏ HLA predictions from NGS shotgun data
☆54Updated 4 months ago
Alternatives and similar repositories for HLAminer
Users that are interested in HLAminer are comparing it to the libraries listed below
Sorting:
- QDNAseq package for Bioconductor☆52Updated last year
- ☆53Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆50Updated 2 weeks ago
- Tools for processing and analyzing structural variants.☆33Updated 10 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated last year
- A software for calculating telomere length☆71Updated 6 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- ☆46Updated 5 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 11 months ago
- ☆25Updated last year
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 3 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Updated 2 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 4 months ago
- Tools for analyzing DNA methylation data☆43Updated last week
- Script to convert GTC/BPM files to VCF☆47Updated last year
- R package for inferring copy number from read depth☆32Updated 3 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- SMN1 copy-number and sequence variant analysis from next generation sequencing data☆23Updated 2 years ago
- Long read to rMATS☆32Updated 2 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last year
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- ☆25Updated 5 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 6 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- Tumor Mutational Burden☆61Updated 2 months ago
- ☆21Updated 3 weeks ago
- ☆30Updated 4 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆67Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated last month