bcgsc / HLAminerLinks
⛏ HLA predictions from NGS shotgun data
☆53Updated last month
Alternatives and similar repositories for HLAminer
Users that are interested in HLAminer are comparing it to the libraries listed below
Sorting:
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆44Updated 2 months ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- QDNAseq package for Bioconductor☆50Updated 10 months ago
- ☆53Updated 2 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆71Updated 4 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- ☆25Updated 5 years ago
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- Benchmarking of CNV calling tools☆18Updated 6 years ago
- ☆43Updated 2 years ago
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Detection of CNVs (deletion/duplication) in target panel based NGS data☆16Updated 2 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- CNV screening and annotation tool☆25Updated 8 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- Tools for analyzing DNA methylation data☆41Updated 3 weeks ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆69Updated 9 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ☆41Updated last year
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆26Updated 4 months ago
- ☆46Updated 5 years ago
- ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data☆25Updated 2 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- Burden testing against public controls☆50Updated last year
- Fork of the Polysolver project☆31Updated 5 years ago