Predicting regulatory DNA elements based on epigenomic signatures
☆31Jun 26, 2024Updated 2 years ago
Alternatives and similar repositories for REPTILE
Users that are interested in REPTILE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆148May 20, 2023Updated 3 years ago
- ☆14May 12, 2023Updated 3 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Nov 26, 2025Updated 9 months ago
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Aug 24, 2017Updated 9 years ago
- ☆14May 26, 2020Updated 6 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Mar 12, 2020Updated 6 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Jan 6, 2016Updated 10 years ago
- ☆19Nov 9, 2020Updated 5 years ago
- GFF toolkit☆17May 23, 2026Updated 3 months ago
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆26Mar 31, 2023Updated 3 years ago
- genome basic statistics tool (e.g. n50, n10, ng50,...)☆15Mar 5, 2012Updated 14 years ago
- Genome Assembly 102☆18Apr 23, 2025Updated last year
- Learning gene-specific regulatory elements from epigenetic data☆11May 7, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 9 years ago
- A comprehensive telomere annotation tool for genome assemblies and graphs.☆18Updated this week
- Analyses of sex chromosome evolution in songbirds☆18Jun 15, 2019Updated 7 years ago
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated last year
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆19Nov 29, 2024Updated last year
- Targeted and non-targeted anticancer drugs and drug regimens☆31Updated this week
- ☆15Oct 19, 2023Updated 2 years ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Jun 5, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Apr 3, 2023Updated 3 years ago
- Figures for the CHM13 T2T SD paper.☆12Sep 12, 2021Updated 5 years ago
- Count kmers with a more efficient (faster) hash table☆23Jun 8, 2024Updated 2 years ago
- ☆26Dec 15, 2025Updated 9 months ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated 2 years ago
- Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivi…☆19Sep 19, 2018Updated 8 years ago
- Genome annotation pre-publication results☆40Sep 12, 2026Updated last week
- plot Multiple Sequence Alignment(MSA) of Clustal by python package☆15Mar 14, 2023Updated 3 years ago
- ☆13Sep 11, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Genomics 3D Visualizer☆14Jun 14, 2024Updated 2 years ago
- ☆30Jun 30, 2024Updated 2 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆110Jun 17, 2022Updated 4 years ago
- plot genome alignment synteny☆21May 25, 2020Updated 6 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆49Mar 26, 2025Updated last year
- Telomere compliment tools☆26Nov 17, 2025Updated 10 months ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago