Predicting regulatory DNA elements based on epigenomic signatures
☆31Jun 26, 2024Updated 2 years ago
Alternatives and similar repositories for REPTILE
Users that are interested in REPTILE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆148May 20, 2023Updated 3 years ago
- ☆14May 12, 2023Updated 3 years ago
- PEDLA: predicting enhancers with deep learning-based algorithmic framework☆16Jan 6, 2016Updated 10 years ago
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Aug 24, 2017Updated 9 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Nov 26, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆11Nov 18, 2021Updated 4 years ago
- Deep learning for identifying cis-regulatory elements and other applications☆34Nov 21, 2016Updated 9 years ago
- ☆14May 26, 2020Updated 6 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Mar 12, 2020Updated 6 years ago
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆20Nov 29, 2024Updated last year
- plot Multiple Sequence Alignment(MSA) of Clustal by python package☆14Mar 14, 2023Updated 3 years ago
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆26Mar 31, 2023Updated 3 years ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated 2 years ago
- VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing☆10Sep 8, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- GFF toolkit☆17Oct 20, 2026Updated last week
- plot genome alignment synteny☆21May 25, 2020Updated 6 years ago
- Learning gene-specific regulatory elements from epigenetic data☆11May 7, 2025Updated last year
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- Visualising discordant reads☆16Sep 2, 2015Updated 11 years ago
- Repository containing the code to reproduce the analyses contained in the MEFISTO manuscript☆13Jul 27, 2021Updated 5 years ago
- genome basic statistics tool (e.g. n50, n10, ng50,...)☆15Mar 5, 2012Updated 14 years ago
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 9 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Genome Assembly 102☆19Apr 23, 2025Updated last year
- Convergence analysis using relative rate and correcting for phylogenetic relatedness☆12Apr 25, 2025Updated last year
- ☆13Nov 15, 2018Updated 7 years ago
- ☆11Feb 12, 2022Updated 4 years ago
- ☆10Nov 20, 2025Updated 11 months ago
- A comprehensive C++ telomere annotation tool for genome assemblies and reads.☆19Oct 2, 2026Updated last month
- Analyses of sex chromosome evolution in songbirds☆18Jun 15, 2019Updated 7 years ago
- ☆19Nov 9, 2020Updated 5 years ago
- Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivi…☆19Sep 19, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- Gene expression viewer template☆12Aug 30, 2017Updated 9 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- ☆15Oct 19, 2023Updated 3 years ago
- Count kmers with a more efficient (faster) hash table☆23Jun 8, 2024Updated 2 years ago
- AccuSyn: An Accurate Web-based Genome Synteny Browser☆16Aug 27, 2024Updated 2 years ago
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 3 years ago