Alternatives and similar repositories for regBase

Users that are interested in regBase are comparing it to the libraries listed below

• raphael-group / chisel
  CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links
  ☆43Updated last year
• broadinstitute / gtex-v8
  Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper
  ☆43Updated 11 months ago
• biosinodx / SCcaller
  Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data
  ☆35Updated last year
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆71Updated 2 years ago
• mccoy-lab / MAGE
  Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…
  ☆42Updated last year
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated last year
• macarthur-lab / tx_annotation
  Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…
  ☆34Updated 3 years ago
• gagneurlab / OUTRIDER
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
  ☆54Updated last month
• WansonChoi / CookHLA
  An accurate and efficient HLA imputation method.
  ☆27Updated 2 years ago
• immunogenomics / HLA-TAPAS
  HLA-TAPAS pipeline for HLA association and fine-mapping studies
  ☆54Updated last year
• qtltools / qtltools
  A complete tool set for molecular QTL discovery and analysis
  ☆59Updated last year
• jlab-code / MethylStar
  A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
  ☆37Updated 4 years ago
• parklab / HiNT
  HiC for copy Number variation and Translocation detection
  ☆40Updated 4 years ago
• fhormoz / caviar
  ☆63Updated 3 years ago
• CshlSiepelLab / LINSIGHT
  ☆27Updated 6 months ago
• zhouhufeng / FAVORannotator
  ☆21Updated 2 years ago
• hms-dbmi / spp
  SPP - R package for analysis of ChIP-seq and other functional sequencing data
  ☆43Updated 4 years ago
• AndreasHeger / gat
  Genomic Association Tester
  ☆35Updated 2 years ago
• davetang / defining_genomic_regions
  Define regions in the genome
  ☆33Updated 3 years ago
• kundajelab / idr
  IDR
  ☆31Updated 2 years ago
• parklab / ShatterSeek
  ☆72Updated 2 years ago
• dan-landau / IronThrone-GoT
  processes GoT amplicon data and generates a table of metrics
  ☆32Updated 3 years ago
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆61Updated 6 years ago
• hall-lab / gtex
  GTEx analysis scripts
  ☆20Updated 8 years ago
• biocore-ntnu / snpflip
  Report reverse and ambiguous strand SNPs in GWAS data
  ☆33Updated 6 years ago
• kundajelab / 3DChromatin_ReplicateQC
  Software to compute reproducibility and quality scores for Hi-C data
  ☆50Updated 6 years ago
• Xinglab / CLAM
  CLIP-seq Analysis of Multi-mapped reads
  ☆31Updated 4 years ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆41Updated 3 years ago
• ksamocha / de_novo_scripts
  Script used to identify de novo variants from sequencing data.
  ☆11Updated 8 years ago
• dnaase / Bis-tools
  A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…
  ☆32Updated 4 years ago