XiaoTaoWang / Best-Labs-of-3D-GenomeLinks
Data and the co-authored network I extracted for lab selection in 3D genome research field
☆15Updated 3 years ago
Alternatives and similar repositories for Best-Labs-of-3D-Genome
Users that are interested in Best-Labs-of-3D-Genome are comparing it to the libraries listed below
Sorting:
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆44Updated 2 years ago
- Architectural stripe detection from 3D genome conformation data☆17Updated last year
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆15Updated this week
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 2 years ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆14Updated 2 years ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆73Updated 2 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated last year
- Statistically Significant loops from HiChIP data☆43Updated last year
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- R package to evaluate the reproducibility of Hi-C data☆26Updated 2 years ago
- DiffDomain is a statistically sound method for detecting differential TADs between conditions☆18Updated last week
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆32Updated 3 months ago
- HiCorr: a Hi-C data bias-correction pipeline☆28Updated 3 months ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆69Updated last year
- Genome-wide contact analysis using sklearn☆68Updated last year
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 9 years ago
- ☆24Updated 4 years ago
- Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.☆47Updated 2 weeks ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆12Updated last year
- ☆17Updated last year
- A Python implementation of the original DI domain caller☆12Updated 4 years ago
- A toolkit for analyzing architectural stripes☆19Updated 7 months ago
- An Optimized Nested TAD caller for Hi-C data☆22Updated 4 years ago
- CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hie…☆23Updated 2 months ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆59Updated last year
- scripts for analyzing the CVDC data.☆19Updated 5 years ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆11Updated 3 years ago