Alternatives and similar repositories for LyRic

Users that are interested in LyRic are comparing it to the libraries listed below

• gagneurlab / splicemap
  ☆21Updated last week
• LappalainenLab / lorals
  ☆36Updated 2 years ago
• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆53Updated 5 months ago
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated 11 months ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆37Updated 4 months ago
• cortes-ciriano-lab / ReConPlot
  ☆23Updated 7 months ago
• mortazavilab / lapa
  Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
  ☆31Updated last year
• novoalab / Nano3P_Seq
  Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)
  ☆13Updated last month
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆18Updated 2 years ago
• XiDsLab / TAGET
  ☆19Updated 2 years ago
• AmpliconSuite / AmpliconReconstructorOM
  Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
  ☆18Updated last year
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆20Updated last week
• loosolab / UROPA
  Universal RObust Peak Annotator
  ☆16Updated last year
• gagneurlab / absplice
  ☆39Updated last month
• gymrek-lab / TRTools
  Toolkit for genome-wide analysis of tandem repeats
  ☆58Updated this week
• mortazavilab / cerberus
  ☆19Updated last year
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆33Updated 5 months ago
• HKU-BAL / Clair3-RNA
  Clair3-RNA - a long-read small variant caller for RNA sequencing data
  ☆23Updated 4 months ago
• macarthur-lab / tx_annotation
  Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…
  ☆33Updated 3 years ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆24Updated last year
• Kuanhao-Chao / OpenSpliceAI
  🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species
  ☆23Updated last month
• shimlab / NanoSplicer
  ☆31Updated 8 months ago
• tkzeng / GeneBayes
  ☆25Updated last month
• SFGLab / ConsensuSV-pipeline
  Automatised pipeline of ConsensuSV workflow.
  ☆23Updated last year
• vierstralab / genome-tools
  Processing and plotting tools for genomics data
  ☆21Updated 2 weeks ago
• a2iEditing / deNovo-Detect
  ☆13Updated 2 years ago
• CCICB / introme
  Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation
  ☆21Updated 4 months ago
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆26Updated last year
• tf2 / CNest
  Copy Number Methods for Detection and Genome Wide Association Tests
  ☆22Updated 9 months ago