guigolab / LyRic

Related projects: ⓘ

• guigolab / tmerge
  Merge transcriptome read-to-genome alignments into non-redundant transcript models
  ☆12Updated 3 months ago
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 2 years ago
• InscriptaLabs / BioCantor
  ☆21Updated 11 months ago
• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆10Updated 10 months ago
• UCSC-nanopore-cgl / margin
  ☆27Updated last year
• cortes-ciriano-lab / ReConPlot
  ☆21Updated 3 months ago
• tf2 / CNest
  Copy Number Methods for Detection and Genome Wide Association Tests
  ☆22Updated 7 months ago
• gymreklab / chips
  Simulation tool for ChIP- and other -seq experiments
  ☆11Updated last year
• fulcrumgenomics / python-snakemake-template
  A template repository for Snakemake pipepline(s) and a python command-line toolkit.
  ☆26Updated 4 months ago
• GooglingTheCancerGenome / sv-channels
  Deep learning-based structural variant filtering method
  ☆31Updated 10 months ago
• biocorecrg / MOP2
  Master of Pores 2
  ☆22Updated 10 months ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆30Updated last month
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆22Updated 2 weeks ago
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆30Updated 5 years ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆19Updated 2 years ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆33Updated 3 weeks ago
• fls-bioinformatics-core / GFFUtils
  Python module and utility programs for working with GFF files
  ☆30Updated 3 years ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated 2 months ago
• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆32Updated 4 months ago
• huangnengCSU / longcallR
  LongcallR is a small variant caller for single molecule long-read RNA-seq data
  ☆40Updated last week
• jts / mbtools
  ☆13Updated last year
• epi2me-labs / fastcat
  Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
  ☆31Updated last month
• HurlesGroupSanger / DeNovoWEST
  ☆21Updated last month
• tkzeng / GeneBayes
  ☆20Updated 5 months ago
• chizksh / digenome-toolkit2
  Digenome-toolkit ver2.
  ☆15Updated 2 years ago
• TrinityCTAT / CTAT-LR-fusion
  fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector
  ☆13Updated this week
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆43Updated 2 years ago
• uedaLabR / nanoDoc
  RNA modification detection using Nanopore raw reads with Deep One Class classification
  ☆19Updated 3 years ago
• rvolden / Mandalorion-Episode-II
  Version II of Mandalorion
  ☆32Updated 5 years ago
• cliu32 / Athlon
  Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing
  ☆14Updated 6 years ago