Alternatives and similar repositories for LyRic

Users that are interested in LyRic are comparing it to the libraries listed below

• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆38Updated 7 months ago
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• gagneurlab / splicemap
  ☆22Updated 3 months ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated last year
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• cortes-ciriano-lab / ReConPlot
  ☆23Updated 10 months ago
• mortazavilab / cerberus
  ☆19Updated last year
• paulsengroup / hictk
  Blazing fast toolkit to work with .hic and .cool files
  ☆41Updated this week
• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆56Updated 8 months ago
• HenrikBengtsson / TopDom
  R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes
  ☆21Updated 2 years ago
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆20Updated 2 years ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆32Updated 2 years ago
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆22Updated 2 months ago
• Xinglab / isoCirc
  isoCirc
  ☆10Updated last year
• novoalab / Nano3P_Seq
  Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)
  ☆13Updated 3 months ago
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆34Updated 2 weeks ago
• Kuanhao-Chao / OpenSpliceAI
  🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species
  ☆28Updated 3 months ago
• a2iEditing / deNovo-Detect
  ☆13Updated 3 years ago
• tkzeng / GeneBayes
  ☆28Updated 4 months ago
• gosianow / DRIMSeq
  Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…
  ☆11Updated 5 years ago
• vaquerizaslab / chess
  Comparison of Hi-C Experiments using Structural Similarity.
  ☆27Updated 2 years ago
• ay-lab / HiCnv
  HiCnv is used to call copy number variations and breakpoints from Hi-C data
  ☆21Updated last year
• XiDsLab / TAGET
  ☆20Updated 3 years ago
• cinquin / MEME
  MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks
  ☆12Updated 8 years ago
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆19Updated 3 weeks ago
• mortazavilab / lapa
  Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
  ☆31Updated last year
• gagneurlab / absplice
  ☆39Updated 3 months ago
• hoffmangroup / umap
  ☆29Updated 3 months ago
• dputhier / pygtftk
  A python package and a set of shell commands to handle GTF files
  ☆49Updated last year
• AmpliconSuite / AmpliconReconstructorOM
  Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
  ☆19Updated last year