program to estimate admixture coefficients from individual genotype or sequence data
☆33Sep 23, 2024Updated 2 years ago
Alternatives and similar repositories for ancestry
Users that are interested in ancestry are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆153Feb 17, 2026Updated 8 months ago
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Nov 19, 2024Updated last year
- Quantitative Trait Cluster Association Test in R☆26Apr 19, 2021Updated 5 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 3 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆59Mar 7, 2025Updated last year
- Rapid and accurate ancestry inference using SNVs.☆31Aug 15, 2025Updated last year
- an R based software package that makes polygenic traits prediction using gradient boosted and LD adjusted gene score weights.☆10Apr 9, 2019Updated 7 years ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 8 years ago
- A wrapper program to parallelize and automate runs of "Structure", "fastStructure" and "MavericK".☆26Jul 15, 2026Updated 3 months ago
- Large scale ancestry inference from PCA data☆26May 2, 2023Updated 3 years ago
- RAPTR-SV uses Read Pair and Split Read methods to identify structural variants in paired-end WGS data☆10Aug 18, 2016Updated 10 years ago
- a tool for predicting mitochondrial DNA deletions using soft-clipping☆23Feb 3, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Mapping-free variant caller for short-read Illumina data☆21Apr 2, 2020Updated 6 years ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆22Nov 20, 2022Updated 3 years ago
- An R package for Standardized Summary, Annotation, Comparison, and Visualization of CNV, CNVR and ROH☆16Oct 17, 2021Updated 5 years ago
- mitochondrial variant analysis tools☆15Mar 4, 2021Updated 5 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 9 years ago
- ☆15Jan 16, 2018Updated 8 years ago
- Program for estimating admixture proportions and doing principal component analysis of a single NGS sample☆12Sep 15, 2026Updated last month
- Structural variant detection and association testing☆109Feb 2, 2023Updated 3 years ago
- ☆16Mar 20, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆16Jan 5, 2018Updated 8 years ago
- HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.☆80Feb 28, 2023Updated 3 years ago
- Re-encryption by proxy and (additive) homomorphic encryption☆13Oct 10, 2018Updated 8 years ago
- phy-mer☆11Oct 12, 2017Updated 9 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆31Sep 27, 2019Updated 7 years ago
- Generic human DNA variant annotation pipeline☆59Aug 11, 2026Updated 2 months ago
- Fast heuristic ARG construction☆12Dec 12, 2016Updated 9 years ago
- Liftover VCF files☆19Dec 10, 2016Updated 9 years ago
- Lightweight resources assembly algorithm☆19May 17, 2017Updated 9 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Aug 25, 2017Updated 9 years ago
- ☆11Oct 23, 2019Updated 7 years ago
- Finding putative exons and constructing splicegraphs using Trans-ABySS contigs☆11Nov 8, 2018Updated 7 years ago
- Workflow for human mitochondria analysis☆10Nov 2, 2024Updated 2 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated 2 years ago
- Identification of structural variations☆12Jul 22, 2022Updated 4 years ago
- Pipeline in place at the UGI for DNA level analysis☆12Aug 29, 2016Updated 10 years ago