provides common tools and lookup tables used primarily by the hgvs and uta packages
☆25Jan 12, 2026Updated last month
Alternatives and similar repositories for bioutils
Users that are interested in bioutils are comparing it to the libraries listed below
Sorting:
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆71Updated this week
- non-redundant, compressed, journalled, file-based storage for biological sequences☆47Nov 10, 2025Updated 3 months ago
- Lightweight, portable variation registration and retrieval☆16Updated this week
- A tool to analyze telomeric reads from WGS or telobait-capture long-read sequencing data☆10Oct 1, 2024Updated last year
- Python library to parse, format, validate, normalize, and map sequence variants according to HGVS Nomenclature (https://hgvs-nomenclature…☆289Feb 10, 2026Updated 3 weeks ago
- A port of biocommons/hgvs to the Rust programming language☆16Feb 26, 2026Updated last week
- A set of tools to annotate VCF files with expression and readcount data☆30Jan 30, 2026Updated last month
- drunk on perbase pileups and lua expressions☆19Nov 15, 2025Updated 3 months ago
- CNV detection tool for targeted NGS panel data☆16Feb 28, 2022Updated 4 years ago
- Automated ACMG/AMP classification for human variants associated with congenital hearing loss☆11May 14, 2025Updated 9 months ago
- methylR: a single shiny solution from sequencer data to pathway analysis☆12Oct 30, 2024Updated last year
- Genomic sequence preprocessing toolkit☆13Jan 13, 2026Updated last month
- A fork of the project Excavator2 from sourceforge.☆10Jun 29, 2017Updated 8 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Mar 29, 2023Updated 2 years ago
- Python interface to the GenoLogics LIMS server via its REST API.☆30Aug 13, 2025Updated 6 months ago
- Find common blocks and differences between DNA sequences☆42Nov 5, 2025Updated 4 months ago
- Plotly BioVisualization 🎯 Interactive Needle and Manhattan Plots & Alignment Viewer☆11Feb 28, 2020Updated 6 years ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆13Jun 10, 2022Updated 3 years ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- ☆17Apr 4, 2025Updated 11 months ago
- Software for the analysis and visualization of site-saturation mutagenesis experiments☆19Apr 21, 2023Updated 2 years ago
- Arima Capture HiC pipeline (Arima-CHiC)☆12May 16, 2024Updated last year
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- Clin.iobio - Workflow and reporting for iobio variant analysis pipeline☆12Oct 7, 2025Updated 5 months ago
- Extremely fast Variant Call Format annotation☆11Dec 25, 2024Updated last year
- Curated list of resources for variant prioritization☆13Nov 18, 2025Updated 3 months ago
- CNV calling algorithm for detection of homozygous and hemizygous deletions from whole exome sequencing data☆12Nov 9, 2025Updated 3 months ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated last year
- DTU analysis tool inspired by llamas☆12Sep 28, 2025Updated 5 months ago
- Reference server implementation for the GA4GH HTSget API standard.☆12May 11, 2023Updated 2 years ago
- Gene copy number prediction from k-mer frequencies☆15Jul 29, 2024Updated last year
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Nov 16, 2022Updated 3 years ago
- ☆17Feb 16, 2024Updated 2 years ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Dec 24, 2024Updated last year
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Aug 10, 2018Updated 7 years ago
- A suite of Dash components for JBrowse's embeddable components☆14Jan 3, 2024Updated 2 years ago
- an open-source pipeline for Affymetrix Axiom genotyping workflow on livestock species☆14Jul 22, 2016Updated 9 years ago