biocommons / bioutilsLinks
provides common tools and lookup tables used primarily by the hgvs and uta packages
☆22Updated 3 months ago
Alternatives and similar repositories for bioutils
Users that are interested in bioutils are comparing it to the libraries listed below
Sorting:
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 5 years ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- The OpEx (Optimised Exome) pipeline☆9Updated 6 years ago
- Genetics training camp☆21Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 9 months ago
- This BLENDER has been sunsetted☆16Updated 8 months ago
- GenoTypes Compressor☆15Updated 3 years ago
- non-redundant, compressed, journalled, file-based storage for biological sequences☆41Updated last month
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 5 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated this week
- Library for indexing VCF files for random access searches by rsID☆17Updated last year
- Universal RObust Peak Annotator☆16Updated last year
- A python package for showing JBrowse views☆25Updated last year
- Build an index for your BAM Index (BAI)☆17Updated 10 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Website to analyze conflicting assertions in ClinVar☆18Updated last year
- SQL support plugin for Nextflow☆26Updated last week
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Updated 2 years ago
- ☆22Updated last year
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- A better, faster way to count guides in CRISPR screens.☆31Updated last month
- Variant Effect Prediction for Python☆15Updated 8 years ago
- A crate for working with genomics chain files.☆11Updated 5 months ago
- ☆29Updated 4 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- Easily run WDL workflows on GCP☆13Updated 3 years ago
- drunk on perbase pileups and lua expressions☆18Updated 3 weeks ago
- Computational Framework to reconstructing tumor clone structures☆15Updated 4 years ago