tjbencomo / ngs-pipelineLinks
Pipeline for Somatic Variant Calling with WES and WGS data
☆24Updated last year
Alternatives and similar repositories for ngs-pipeline
Users that are interested in ngs-pipeline are comparing it to the libraries listed below
Sorting:
- tools to find circRNAs in RNA-seq data☆44Updated 8 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated 3 weeks ago
- A pipeline to process m6A-seq data and down stream analysis.☆45Updated 5 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆63Updated 2 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 4 months ago
- From RNA-seq raw reads to enriched pathways by DEGs☆33Updated last year
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆51Updated last month
- A computational workflow for exitron splicing identification☆12Updated last year
- ☆50Updated 7 years ago
- Tutorial Website☆60Updated 4 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 6 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Updated 3 years ago
- ☆59Updated 4 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated last month
- Estimate locus specific human LINE-1 expression.☆39Updated 2 weeks ago
- The snakemake analysis workflow for bioinformatics☆25Updated last year
- A list of alternative splicing analysis resources☆46Updated 7 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 8 months ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆37Updated 4 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆74Updated last month
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆81Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 9 months ago
- Transcriptomics Visualization R package.☆74Updated 7 months ago
- release version☆54Updated 3 years ago