Pipeline for Somatic Variant Calling with WES and WGS data
☆24May 7, 2024Updated 2 years ago
Alternatives and similar repositories for ngs-pipeline
Users that are interested in ngs-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This Snakemake pipeline implements the GATK best-practices workflow☆264Jun 8, 2023Updated 2 years ago
- Functional code templates for the Star Protocols paper describing consolidated WES variant calling with 3 callers☆10Oct 18, 2024Updated last year
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Feb 19, 2020Updated 6 years ago
- Scripts in R for Landscape Genomics Analyses v.2☆10Feb 17, 2023Updated 3 years ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆10Feb 27, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Secure Cloud Object REsource: file transfer microservice☆18Apr 15, 2026Updated 3 weeks ago
- Snakemake-based computational workflow for neoantigen prediction from diverse sources☆17Mar 26, 2026Updated last month
- a gatk4 pipeline with NA12878 demo dateset ,conda environment used(no GPU)☆15Aug 28, 2019Updated 6 years ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Jan 18, 2022Updated 4 years ago
- Immunoglobulin and T-Cell receptor rearrangement software☆52Jan 9, 2026Updated 4 months ago
- RNA-seq workflow for Snakemake based on STAR and featureCounts.☆23May 25, 2019Updated 6 years ago
- In this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Pra…☆16Oct 16, 2019Updated 6 years ago
- ☆16Jun 2, 2021Updated 4 years ago
- ☆10Jan 24, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ILIAD: A suite of automated Snakemake workflows for processing genomic data for downstream applications☆28Dec 12, 2023Updated 2 years ago
- ☆17Jul 13, 2021Updated 4 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆77Sep 12, 2024Updated last year
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Sep 19, 2017Updated 8 years ago
- Reference data: BED files, genes, transcripts, variations.☆91Nov 28, 2017Updated 8 years ago
- A Pipeline to Process RNAseq Data☆17Jun 15, 2022Updated 3 years ago
- ☆17May 10, 2023Updated 2 years ago
- ☆13Oct 14, 2017Updated 8 years ago
- An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM fil…☆11Sep 17, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package to work with ctDNA sequencing data☆47Feb 20, 2022Updated 4 years ago
- Generate a spatial catalogue from multiplexed imaging data☆17Jun 12, 2025Updated 10 months ago
- A computational workflow for exitron splicing identification☆15Aug 30, 2024Updated last year
- Gene set enrichment analysis for single-cell RNAseq data☆31Feb 17, 2023Updated 3 years ago
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- Automate Absolute Copy Number Calling using 'ABSOLUTE' package☆40Nov 28, 2023Updated 2 years ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Nov 20, 2022Updated 3 years ago
- scSNV Mapping tool for 10X Single Cell Data☆26Dec 19, 2025Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Clinical Whole Genome and Exome Sequencing Pipeline☆30Oct 27, 2025Updated 6 months ago
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 5 years ago
- Portable database of microhaplotype marker and allele frequency data☆11Oct 2, 2025Updated 7 months ago
- Single Cell Analysis Automated Workflow☆28May 22, 2023Updated 2 years ago
- Signaling Pathway Visualizer☆10Jun 22, 2019Updated 6 years ago
- ☆11Mar 23, 2022Updated 4 years ago
- 基于大模型搭建的聊天机器人，同时支持 微信公众号、企业微信应用、飞书、钉钉 等接入，可选择GPT3.5/GPT-4o/GPT4.0/ Claude/文心一言/讯飞星火/通义千问/ Gemini/GLM-4/Claude/Kimi/LinkAI，能处理文本、语音和图片，访问操…☆11Feb 4, 2025Updated last year