tjbencomo / ngs-pipelineLinks
Pipeline for Somatic Variant Calling with WES and WGS data
☆23Updated last year
Alternatives and similar repositories for ngs-pipeline
Users that are interested in ngs-pipeline are comparing it to the libraries listed below
Sorting:
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 2 months ago
- ☆59Updated 2 months ago
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆80Updated 4 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆66Updated last year
- release version☆54Updated 3 years ago
- Estimate locus specific human LINE-1 expression.☆39Updated 3 weeks ago
- ☆50Updated 7 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Tutorial Website☆59Updated 4 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆50Updated 3 weeks ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆62Updated 2 years ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last year
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 8 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 10 months ago
- A list of alternative splicing analysis resources☆46Updated 6 months ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆54Updated 7 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 8 months ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 6 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆29Updated 8 months ago
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆64Updated last year
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 6 years ago
- ATAC-seq processing pipeline☆34Updated 3 years ago