zhqingit / giremiLinks
GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.
☆44Updated 8 years ago
Alternatives and similar repositories for giremi
Users that are interested in giremi are comparing it to the libraries listed below
Sorting:
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated last month
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- ☆58Updated last month
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- ☆62Updated last year
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆111Updated 4 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- Tutorial Website☆59Updated 4 years ago
- ☆45Updated 2 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- Quantification of transposable element expression using RNA-seq☆74Updated last year
- Software for Quantifying Interspersed Repeat Expression☆61Updated 3 years ago
- RNA editing tests☆17Updated 4 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆68Updated last month
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆49Updated last week
- SingleCell Nanopore sequencing data analysis☆60Updated 3 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 7 months ago
- Allele-specific alignment sorting☆58Updated 2 years ago
- Estimate locus specific human LINE-1 expression.☆37Updated 2 years ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 3 months ago
- ☆71Updated 2 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago