GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.
☆44May 11, 2017Updated 8 years ago
Alternatives and similar repositories for giremi
Users that are interested in giremi are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RES-Scanner is a software package for genome-wide identification and annotation of RNA-editing sites for any species with matched RNA-Seq…☆13Jul 13, 2016Updated 9 years ago
- SNP-free RNA editing Identification Toolkit☆49Jan 7, 2025Updated last year
- ☆15Aug 25, 2022Updated 3 years ago
- ☆61Jul 17, 2025Updated 8 months ago
- A tool for the calculation of RNA-editing index for RNA seq data☆46Jan 8, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Jul 18, 2025Updated 8 months ago
- Predicting oncogenic potential of gene fusions☆13Feb 13, 2016Updated 10 years ago
- JAVA framework for accurate SNV assessment☆12Jun 28, 2021Updated 4 years ago
- RNA editing tests☆17Sep 24, 2020Updated 5 years ago
- RNA editing quantification in deep transcriptome data☆16Jul 17, 2025Updated 8 months ago
- RNA-Seq Mutation Detection☆28Mar 3, 2026Updated 3 weeks ago
- ☆14May 23, 2016Updated 9 years ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆14Jan 21, 2018Updated 8 years ago
- ☆18Jan 17, 2019Updated 7 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.☆12Sep 15, 2023Updated 2 years ago
- New version of JACUSA -> 2.0☆31Mar 6, 2026Updated 3 weeks ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆32Feb 26, 2020Updated 6 years ago
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 2 years ago
- ☆15Jun 3, 2025Updated 9 months ago
- 🌓 Allele specific analyses across cell states and conditions☆10Nov 28, 2022Updated 3 years ago
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 2 years ago
- A novel pipeline framework to accelerate bioinformatics analysis☆31Oct 5, 2025Updated 5 months ago
- RNA editing detection based on machine learning☆10Feb 7, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆14Mar 13, 2018Updated 8 years ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆16Sep 10, 2024Updated last year
- Find circRNAs in RNA-seq data.☆15Jul 5, 2016Updated 9 years ago
- ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequenc…☆11Apr 20, 2022Updated 3 years ago
- A Python library for reading and writing PacBio® data files☆41Mar 6, 2026Updated 3 weeks ago
- Quantification of transposable element expression using RNA-seq☆89Feb 8, 2024Updated 2 years ago
- Transposable element databases☆15Apr 7, 2022Updated 3 years ago
- Somatic indel discovery tool for tumor RNA-Seq data.☆24Nov 21, 2025Updated 4 months ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆13Sep 22, 2017Updated 8 years ago
- RNA-seq Quantification of Alternative Polyadenylation☆51Mar 21, 2026Updated last week
- single cell sequencing analysis tutorial☆18Jan 15, 2020Updated 6 years ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 2 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- Gene Set Enrichment Analysis in Python☆11Oct 26, 2018Updated 7 years ago
- A tool to identify CLIP-seq peaks☆72Oct 31, 2025Updated 4 months ago