AndreasHeger / gatLinks
Genomic Association Tester
☆35Updated 2 years ago
Alternatives and similar repositories for gat
Users that are interested in gat are comparing it to the libraries listed below
Sorting:
- ☆39Updated 4 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- Enhanced version of the FastQTL QTL mapper☆71Updated 2 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆63Updated 8 months ago
- BISulfite-seq CUI Toolkit☆26Updated last week
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Updated 6 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆37Updated 4 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 3 years ago
- ☆75Updated 2 years ago
- IDR☆30Updated 2 years ago
- SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances☆92Updated 3 years ago
- 4C-seq processing pipeline☆26Updated 10 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- A Python library to visualize and analyze long-read transcriptomes☆65Updated 3 weeks ago
- Tools for analyzing DNA methylation data☆44Updated last month
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- QDNAseq package for Bioconductor☆54Updated last year
- BigWig and BAM utilities☆102Updated last year
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- A software for calculating telomere length☆73Updated 7 years ago
- Allele-specific alignment sorting☆61Updated 3 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Tools for processing and analyzing structural variants.☆34Updated 10 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆44Updated 4 years ago
- allele specific DNA methylation haplotype region☆13Updated 2 years ago