Genomic Association Tester
☆35May 2, 2023Updated 2 years ago
Alternatives and similar repositories for gat
Users that are interested in gat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The cattle Genotype-Tissue Expression atlas v1☆29Mar 14, 2023Updated 3 years ago
- Assemble and following pipeline used in wisent genome paper.☆17Dec 23, 2016Updated 9 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Apr 12, 2019Updated 7 years ago
- Chromatin segmentation in R☆19Feb 4, 2018Updated 8 years ago
- Normalizing Hi-C contact counts efficiently☆44May 21, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆16Apr 29, 2020Updated 5 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Aug 15, 2018Updated 7 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆18Aug 5, 2021Updated 4 years ago
- ☆24Jul 29, 2025Updated 8 months ago
- Python-based UCSC genome browser snapshot-taker and gallery-maker☆12May 21, 2024Updated last year
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- tandem repeat finding from erroneous long reads☆15Aug 4, 2025Updated 8 months ago
- ☆10Feb 25, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Jan 23, 2022Updated 4 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆11Aug 8, 2025Updated 8 months ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆34Jul 14, 2017Updated 8 years ago
- ☆30Jun 30, 2024Updated last year
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Jan 19, 2026Updated 2 months ago
- ☆18Nov 9, 2020Updated 5 years ago
- Repository☆10Oct 23, 2024Updated last year
- ☆39Apr 25, 2023Updated 2 years ago
- cgat-apps repository☆35Apr 9, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Jul 7, 2023Updated 2 years ago
- Learn and validate subtypes from multiple traits☆20Jun 15, 2021Updated 4 years ago
- Cluster-based analysis of CpG methylation☆13Jan 11, 2024Updated 2 years ago
- Functional genomics and genome-wide association studies☆70Jul 24, 2018Updated 7 years ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆21Aug 19, 2025Updated 7 months ago
- Script and pipeline for BRAINcode project☆17May 24, 2021Updated 4 years ago
- Hi-C data analysis tool☆13May 31, 2017Updated 8 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Feb 26, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Clinical Whole Genome and Exome Sequencing Pipeline☆30Oct 27, 2025Updated 5 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Oct 14, 2025Updated 6 months ago
- significance testing over interval overlaps☆30Jul 11, 2020Updated 5 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Jun 3, 2021Updated 4 years ago
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆31Oct 9, 2017Updated 8 years ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago