AndreasHeger / gatLinks
Genomic Association Tester
☆31Updated 2 years ago
Alternatives and similar repositories for gat
Users that are interested in gat are comparing it to the libraries listed below
Sorting:
- ☆22Updated 6 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- ☆13Updated 7 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆46Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- BISulfite-seq CUI Toolkit☆22Updated last month
- 4C-seq processing pipeline☆23Updated 3 months ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 8 months ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- Find and characterise transposable element insertions☆21Updated 2 years ago
- ☆37Updated 5 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- ☆23Updated 4 years ago
- QDNAseq bin annotation for hg38☆15Updated 2 months ago
- a set of NGS pipelines☆24Updated this week
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated last month
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Detection of differential translated genes using Ribo-seq☆16Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 6 months ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago