AndreasHeger / gat
Genomic Association Tester
☆30Updated last year
Alternatives and similar repositories for gat:
Users that are interested in gat are comparing it to the libraries listed below
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- ☆13Updated 7 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆44Updated 2 years ago
- 4C-seq processing pipeline☆23Updated 10 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- Detection of differential translated genes using Ribo-seq☆15Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 5 months ago
- a set of NGS pipelines☆24Updated last week
- ☆23Updated 3 years ago
- ☆36Updated 5 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- ☆30Updated 6 years ago
- Splice junction analysis and filtering from BAM files☆39Updated 2 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated last year
- A software for calculating telomere length☆68Updated 6 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- ☆21Updated 2 months ago
- ☆8Updated this week
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- ☆16Updated 6 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 2 years ago
- IDR☆31Updated last year
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆31Updated 3 years ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆34Updated 3 years ago
- BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool☆21Updated last year