Code used to generate manuscript figures and results.
☆14Jan 10, 2024Updated 2 years ago
Alternatives and similar repositories for cmrg-benchmarkset-manuscript
Users that are interested in cmrg-benchmarkset-manuscript are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Aug 1, 2021Updated 5 years ago
- ☆11Jan 4, 2025Updated last year
- A long-read somatic phasing software for tumor-only sequencing☆17Nov 2, 2026Updated last week
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆46Jan 26, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Apr 18, 2024Updated 2 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- ☆19Apr 14, 2024Updated 2 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 10 years ago
- pythonic wrapper for htslib☆24Aug 8, 2017Updated 9 years ago
- vcfdist: Accurately benchmarking phased variant calls☆90Aug 28, 2026Updated 2 months ago
- ☆20Nov 30, 2023Updated 2 years ago
- Description of VCF to aGDS conversion and annotation on the UK Biobank RAP☆14Sep 29, 2025Updated last year
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆85Nov 16, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Building a Chinese pan-genome of 486 individuals☆12Nov 23, 2022Updated 3 years ago
- PanVariants: pangenome-based and AI-based high accurate variant calling pipeline.☆10Aug 26, 2026Updated 2 months ago
- An analysis pipeline for Nanopore direct-RNA sequencing☆15Jul 24, 2025Updated last year
- Pangenome-based structural variation caller☆43Nov 1, 2026Updated last week
- Variant call adjudication☆17Jun 13, 2024Updated 2 years ago
- ☆35Jul 13, 2026Updated 3 months ago
- Interactive table from gemini output☆10Mar 5, 2019Updated 7 years ago
- Mahi-mahi is a command-line bioinformatics tool for analyzing tandem repeat loci from long-read nanopore sequencing data.☆20Oct 16, 2026Updated 3 weeks ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆19Apr 2, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆37Sep 13, 2023Updated 3 years ago
- Bedfile perturbation tool☆17Mar 6, 2026Updated 8 months ago
- ☆14May 30, 2023Updated 3 years ago
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 3 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆120Jun 6, 2021Updated 5 years ago
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Jul 2, 2022Updated 4 years ago
- DNN-based small variant caller☆12May 2, 2022Updated 4 years ago
- ☆10Dec 12, 2017Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Hybrid somatic SV caller using long reads and short-read refinement for tumor–normal sequencing.☆17May 14, 2026Updated 5 months ago
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆14Jul 1, 2026Updated 4 months ago
- ☆25Aug 5, 2025Updated last year
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Sep 25, 2019Updated 7 years ago
- ☆15Jan 16, 2018Updated 8 years ago
- ☆24Feb 22, 2023Updated 3 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
Are these results useful?