Alternatives and similar repositories for nf-dragen

Users that are interested in nf-dragen are comparing it to the libraries listed below

• citiususc / BigSeqKit
  BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
  ☆56Updated last year
• chanzuckerberg / idseq-workflows
  Portable WDL workflows for IDseq production pipelines
  ☆32Updated 3 years ago
• kaanb93 / q2-krona
  Implementation of Krona to QIIME2
  ☆16Updated last year
• fmalmeida / ngs-preprocess
  A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
  ☆34Updated last year
• Arcadia-Science / seqqc
  A Nextflow pipeline to identify quality control issues with new sequencing data.
  ☆28Updated 2 years ago
• montilab / nf-gwas-pipeline
  A Nextflow Genome-Wide Association Study (GWAS) Pipeline
  ☆35Updated 3 weeks ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆33Updated last year
• ryangreenj / bioinformatics_tool_recommendation
  ☆19Updated 2 years ago
• mccoy-lab / hgv_modules
  Teaching modules for Human Genome Variation Lab.
  ☆20Updated last month
• gregpoore / tcga_rebuttal
  Re-analysis of data provided by Gihawi et al. 2023 bioRxiv
  ☆26Updated last year
• cement-head / GPU-Bioinformatics
  Listing of GPU based bioinformatics software & sites & publications
  ☆10Updated 3 years ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆24Updated 3 years ago
• KevinKuchinski / ProbeTools
  Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa
  ☆25Updated 2 years ago
• gtonkinhill / TCGA_analysis
  ☆27Updated last year
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆32Updated last month
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆15Updated 10 months ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆37Updated 3 months ago
• saezlab / flop
  FunctionaL Omics Processing platform
  ☆13Updated 11 months ago
• nch-igm / snvstory
  Rapid and accurate ancestry inference using SNVs.
  ☆19Updated last week
• beardymcjohnface / Snaketool
  Cookiecutter profile for making a Snakemake-based bioinformatics tool, but without the fluff
  ☆51Updated last year
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆23Updated last year
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated last year
• pnnl / fqc
  Extensible quality control dashboard built around FASTQ assessment.
  ☆14Updated 6 years ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated last month
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆22Updated last month
• pantherdb / TreeGrafter
  TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.
  ☆11Updated 4 years ago
• carpentries-incubator / workflows-nextflow
  Workflow management with Nextflow and nf-core
  ☆25Updated 6 months ago
• alexherbig / MultiVCFAnalyzer
  ☆11Updated 5 years ago
• mol-evol / panGPT
  A Generative Pre-Trained Transformer Package for Pangenomes
  ☆51Updated 2 months ago
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆20Updated last year