snz20 / carnelian
☆11Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for carnelian
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- blast, shmlast☆21Updated 4 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Updated 3 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- Simulate mutations in genomes☆15Updated 4 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- ☆19Updated 7 years ago
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- Luslab nextflow modules☆14Updated 3 years ago
- Indel-aware consensus from aligned BAMs☆20Updated last year
- reference free variant assembly☆32Updated last year
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆14Updated 5 months ago
- A message queue for genomic surveillance☆20Updated 3 years ago
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Updated 2 years ago
- Ebola virus surveillance☆16Updated 8 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 5 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- Genome assembly quality improvement assisted by alternative assemblies and paired-end Illumina reads☆7Updated 5 years ago
- ☆22Updated 2 years ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 4 years ago
- exploring viral genome assembly with variation graph tools☆19Updated 4 years ago
- CAMITAX: Taxon labels for microbial genomes☆29Updated 10 months ago
- ☆14Updated 8 years ago
- ☆16Updated 6 years ago
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆16Updated 6 years ago
- Annotate your metagenome assemblies☆11Updated 6 years ago
- multi-tool QC for minion data☆10Updated 6 years ago
- Variant call adjudication☆16Updated 4 months ago