adarob / eXpress
Streaming fragment assignment and quantification for high-throughput sequencing.
☆36Updated 4 years ago
Related projects: ⓘ
- An integrated high performance bioinformatics toolkit☆23Updated 5 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 7 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 5 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Updated 9 years ago
- Library of snakemake rules.☆12Updated 5 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 8 years ago
- ☆43Updated 8 years ago
- reference free variant assembly☆32Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 5 years ago
- A sparse k-mer graph based, memory-efficient genome assembler.☆10Updated 6 years ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 11 years ago
- Fast and accurate sequence demultiplexing☆24Updated last month
- a wee tool for random access into BGZF files.☆83Updated 6 years ago
- ☆13Updated this week
- BioDSL (pronounced Biodiesel) is a Domain Specific Language for creating bioinformatic analysis workflows.☆16Updated 6 years ago
- What's The Function of these genes?☆23Updated 7 years ago
- ☆37Updated 4 years ago
- Simple tool to verticalize text delimited files.☆35Updated 4 months ago
- R tools to interact with hap.py output☆15Updated 5 years ago
- Classify sequencing reads using MinHash.☆47Updated 4 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆53Updated 4 years ago
- EXPERIMENTAL implementation of side graph☆10Updated 9 years ago
- A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics☆13Updated 8 years ago
- Stupid Simple Structural Variant View☆25Updated 7 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Interactive Visual Analysis of differential gene expression test results☆21Updated 7 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆51Updated 6 months ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 8 years ago
- ☆20Updated 9 years ago