adarob / eXpressLinks
Streaming fragment assignment and quantification for high-throughput sequencing.
☆38Updated 6 years ago
Alternatives and similar repositories for eXpress
Users that are interested in eXpress are comparing it to the libraries listed below
Sorting:
- Fast and memory-efficient sequencing error corrector☆94Updated last week
- The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline☆33Updated 7 years ago
- ☆43Updated 9 years ago
- Visualise interstrain recombination from environmental samples.☆26Updated 6 years ago
- ☆26Updated 4 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- ☆20Updated 11 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Updated 3 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- ☆36Updated 5 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆32Updated 7 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Request for comments on interchangeable bioinformatics containers☆39Updated 6 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Updated 6 years ago
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆53Updated last year
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- ☆73Updated 6 years ago
- Tools for bam file processing☆55Updated 10 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Updated 5 years ago
- Course material for the de novo assembly part of the INF-BIO9120 course at Univ. of Oslo Fall 2013☆37Updated 12 years ago
- Guide to transcriptome assembly & analysis☆21Updated 8 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆27Updated 7 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago