Alternatives and similar repositories for hgvs-rs:

Users that are interested in hgvs-rs are comparing it to the libraries listed below

• biocommons / bioutils
  provides common tools and lookup tables used primarily by the hgvs and uta packages
  ☆22Updated 3 weeks ago
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆63Updated this week
• biocommons / anyvar
  [in development] Proof-of-Concept variation translation, validation, and registration service
  ☆13Updated 3 weeks ago
• biocommons / biocommons.seqrepo
  non-redundant, compressed, journalled, file-based storage for biological sequences
  ☆40Updated last week
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆27Updated last month
• SACGF / cdot
  Transcript versions for HGVS libraries
  ☆30Updated 2 months ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 9 months ago
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆79Updated 2 months ago
• onecodex / taxonomy
  Python and Rust library for loading, saving, and manipulating taxonomic trees
  ☆37Updated 2 weeks ago
• informationsea / vcf-rs
  Rust implmentation of VCF parser
  ☆23Updated 2 years ago
• ericminikel / minimal_representation
  Convert genetic variants to minimal representation
  ☆23Updated 7 years ago
• google / best
  Bam Error Stats Tool (best): analysis of error types in aligned reads.
  ☆129Updated last month
• brentp / hts-zig
  ziglang + htslib
  ☆20Updated 3 years ago
• maragkakislab / samql
  SQL-like query language for the SAM/BAM file format
  ☆28Updated last year
• informationsea / bgzip-rs
  bgzip support for Rust
  ☆16Updated last year
• cancervariants / variation-normalization
  Services and guidelines for normalizing variants
  ☆14Updated last week
• ga4gh / htsget
  Python client for GA4GH htsget protocol
  ☆15Updated 2 years ago
• nextflow-io / nf-sqldb
  SQL support plugin for Nextflow
  ☆26Updated 2 months ago
• aseyboldt / fastq-rs
  ☆51Updated 2 years ago
• rust-bio / rust-bio-types
  A library of common biomedical types.
  ☆38Updated 3 weeks ago
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆34Updated 2 months ago
• fulcrumgenomics / guide-counter
  A better, faster way to count guides in CRISPR screens.
  ☆31Updated last week
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆83Updated last month
• stjude-rust-labs / chainfile
  A crate for working with genomics chain files.
  ☆11Updated 2 months ago
• zachcp / bioinformaticstoolkit
  Build and deploy cross platform bioinformatic utilities with Rust.
  ☆18Updated last month
• dnanexus / dxWDL
  Workflow Description Language compiler for the DNAnexus platform
  ☆40Updated last year
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆61Updated 7 months ago
• brentp / pbr
  drunk on perbase pileups and lua expressions
  ☆17Updated last year
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated 2 years ago
• mlin / spVCF
  Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently
  ☆58Updated last year