SBRG / Protein_ML
Machine learning workflows for analyzing high-throughput protein data
☆26Updated 8 years ago
Alternatives and similar repositories for Protein_ML
Users that are interested in Protein_ML are comparing it to the libraries listed below
Sorting:
- Python package and command line tool for epitope prediction☆51Updated 9 months ago
- software for the analysis and visualization of deep mutational scanning data☆34Updated 2 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆72Updated 2 weeks ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 3 years ago
- MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect☆27Updated last month
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 3 years ago
- ☆40Updated 3 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆38Updated last month
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆31Updated 3 weeks ago
- Detects hotspot regions for somatic mutations in 3D protein structures☆2Updated last year
- iCodon customizes gene expression based on the codon composition☆15Updated last year
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆85Updated last year
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆42Updated last month
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 3 months ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- ☆14Updated 5 years ago
- Deep learning model to predict degron sequences☆20Updated 2 years ago
- Predicting gene expression levels from genomic sequences☆53Updated 4 years ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆44Updated last week
- ☆38Updated last year
- Python package to plot sequence logos☆29Updated last year
- Evolutionary conservation estimation of residues or nucleotides☆42Updated 3 years ago
- mist R package files☆10Updated last week
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆48Updated 9 months ago
- Tool for deep mutational scanning experiments.☆49Updated 2 months ago
- Code for the analyses in the human reference interactome paper.☆27Updated 2 years ago
- A high-fidelity E. coli RNA-seq compendium☆32Updated 4 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago