Alternatives and similar repositories for Protein_ML

Users that are interested in Protein_ML are comparing it to the libraries listed below

• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆51Updated last year
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆50Updated last month
• OATML / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆67Updated 2 years ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆50Updated 6 years ago
• CCSB-DFCI / HuRI_paper
  Code for the analyses in the human reference interactome paper.
  ☆27Updated 2 years ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆48Updated 11 months ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆74Updated last week
• dosorio / Peptides
  An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
  ☆89Updated last year
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆35Updated 4 years ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆67Updated 3 years ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆20Updated last year
• IdoSpringer / ERGO
  ERGO is a deep learing based model for predicting TCR-peptide binding.
  ☆18Updated 2 years ago
• MedChaabane / deepRAM
  End-to-end deep learning toolkit for predicting protein binding sites and motifs.
  ☆45Updated 6 years ago
• matsengrp / vampire
  🧛 Deep generative models for TCR sequences 🧛
  ☆17Updated 3 years ago
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆35Updated 2 years ago
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆53Updated 4 months ago
• lehner-lab / DiMSum
  An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
  ☆33Updated 3 months ago
• JJAlmagro / subcellular_localization
  ☆58Updated 8 years ago
• GreiffLab / immuneSIM
  ☆38Updated last year
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆40Updated last month
• varnivey / ipanda
  insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…
  ☆25Updated 8 years ago
• masato-ogishi / Repitope
  Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
  ☆24Updated last year
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 3 years ago
• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆19Updated 2 years ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆71Updated 2 years ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆30Updated last year
• uci-cbcl / HLA-bind
  Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction
  ☆26Updated 8 years ago
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆20Updated 2 years ago
• mickaelleclercq / BioDiscML
  Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data
  ☆31Updated 3 weeks ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆66Updated 7 years ago