SBRG / Protein_MLLinks
Machine learning workflows for analyzing high-throughput protein data
☆26Updated 9 years ago
Alternatives and similar repositories for Protein_ML
Users that are interested in Protein_ML are comparing it to the libraries listed below
Sorting:
- Python package and command line tool for epitope prediction☆52Updated last year
- Comprehensive Python client for the Uniprot REST API☆53Updated 2 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆66Updated 3 years ago
- Code for LazyAF pipeline☆21Updated last year
- ☆33Updated 3 years ago
- A Python package for mapping sequence aligned data onto protein structures☆36Updated 4 years ago
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆94Updated last year
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 3 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆54Updated 6 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆77Updated last week
- Deep learning model to predict degron sequences☆19Updated 2 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Updated 3 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆28Updated 8 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- Shiny app to easily create publishable plots for scientific papers☆39Updated 4 months ago
- Code for the analyses in the human reference interactome paper.☆28Updated 3 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 4 years ago
- software for the analysis and visualization of deep mutational scanning data☆34Updated 3 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆43Updated 3 weeks ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 10 months ago
- ☆38Updated 3 months ago
- ☆38Updated 2 years ago
- DeepECtransformer☆29Updated 2 years ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆49Updated 2 weeks ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Updated 2 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆25Updated 2 years ago
- A high-fidelity E. coli RNA-seq compendium☆33Updated 4 years ago