gifford-lab / DeepLigand
☆17Updated 2 years ago
Related projects: ⓘ
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆25Updated 7 years ago
- ☆22Updated 8 months ago
- Python package and command line tool for epitope prediction☆48Updated last month
- 🧛 Deep generative models for TCR sequences 🧛☆16Updated 2 years ago
- ☆38Updated 9 months ago
- Feature map and function annotation of Proteins☆27Updated 3 months ago
- ☆63Updated last year
- ☆9Updated 5 months ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 7 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆41Updated 5 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆32Updated 2 years ago
- HLA-II ligand predictor.☆34Updated last year
- Code for 5UTR project☆22Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆59Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆34Updated 2 years ago
- Deep learning model to predict degron sequences☆18Updated last year
- HLA-I ligand predictor☆26Updated 4 months ago
- GraphProt: modelling binding preferences of RNA-binding proteins☆17Updated 6 years ago
- Graph-based representation learning method for protein function prediction☆24Updated 4 years ago
- identification of immunogenic neoepitopes☆11Updated last year
- Detects hotspot regions for somatic mutations in 3D protein structures☆2Updated 6 months ago
- A unified framework of perturbation and gradient-based attribution methods for Deep Neural Networks interpretability☆8Updated 5 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆40Updated 2 weeks ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆22Updated 6 months ago
- predicting peptide and TCR interaction☆20Updated 3 years ago
- Knowledge-primed neural networks☆34Updated last year
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆29Updated 2 years ago
- ☆15Updated 6 months ago
- Conservation analysis of homologous proteins with Python☆9Updated 3 years ago