JJAlmagro / subcellular_localization
☆59Updated 7 years ago
Alternatives and similar repositories for subcellular_localization:
Users that are interested in subcellular_localization are comparing it to the libraries listed below
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆44Updated 5 years ago
- ☆72Updated last year
- Mutation effects predicted from sequence co-variation☆63Updated 7 years ago
- Evolutionary velocity with protein language models☆86Updated last year
- Analysis and figure code from Alley et al. 2019.☆58Updated last year
- A convolutional neural network to predict PPI interactions☆41Updated 6 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆17Updated 2 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆71Updated 10 months ago
- Multi-class signal peptide prediction and structure decoding model.☆83Updated last month
- Bioinformatics code for paper associated with deep diversification of AAV☆40Updated 3 months ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆45Updated 6 months ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆46Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆65Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆50Updated 10 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆57Updated 3 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆72Updated 4 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- Protein sequence classification with self-supervised pretraining☆83Updated 3 years ago
- Python package and command line tool for epitope prediction☆51Updated 7 months ago
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆67Updated 7 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆167Updated 11 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Feature map and function annotation of Proteins☆32Updated 8 months ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆29Updated last year
- ☆24Updated last year
- Collection of papers related to BCR repertoire analyses☆18Updated 3 years ago
- ☆59Updated 2 years ago
- ☆19Updated 2 years ago
- Species-aware DNA language modeling☆18Updated 2 years ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆28Updated 2 years ago