jbloomlab / dms_tools2Links
software for the analysis and visualization of deep mutational scanning data
☆34Updated 2 years ago
Alternatives and similar repositories for dms_tools2
Users that are interested in dms_tools2 are comparing it to the libraries listed below
Sorting:
- Tool for deep mutational scanning experiments.☆54Updated 5 months ago
- iCodon customizes gene expression based on the codon composition☆15Updated last year
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆40Updated last month
- ☆77Updated last year
- A Rich renderable for viewing Multiple Sequence Alignments in the terminal.☆85Updated 3 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆74Updated last month
- HLA-II ligand predictor.☆44Updated 2 years ago
- ☆65Updated 6 months ago
- HLA-I ligand predictor☆42Updated 8 months ago
- COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …☆17Updated 2 years ago
- Comprehensive Python client for the Uniprot REST API☆51Updated 2 months ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆142Updated 8 months ago
- An RNA manipulation library.☆57Updated last year
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated 2 months ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆48Updated last month
- The tRNA adaptation index☆18Updated 4 months ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- Models, design algorithms, and other software related to Salis lab publications☆35Updated 9 months ago
- Multi-class signal peptide prediction and structure decoding model.☆91Updated 6 months ago
- A PCR primer tool for DNA assembly flows☆33Updated last year
- Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations☆11Updated 2 years ago
- Deep learning embedding for nucleotide sequences☆19Updated 5 months ago
- Associated code for EvoWeaver publication☆15Updated 3 months ago
- RNA secondary structure/sequence profiles for homology search and alignment☆113Updated 9 months ago
- CRISPR Cas9 ontarget prediction software☆27Updated 5 months ago
- ☆14Updated 8 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- Sequence analysis library used by Eddy/Rivas lab code☆48Updated 3 weeks ago
- Desktop application for colouring/shading sequence alignments☆29Updated 2 years ago