software for the analysis and visualization of deep mutational scanning data
☆34Oct 6, 2022Updated 3 years ago
Alternatives and similar repositories for dms_tools2
Users that are interested in dms_tools2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Create NNN primers tiling codons of a gene for codon mutagenesis☆14Jan 13, 2021Updated 5 years ago
- Tool for deep mutational scanning experiments.☆59May 6, 2026Updated last month
- Align sequences and then parse features.☆17Oct 24, 2025Updated 8 months ago
- phylogenetic analyses informed by deep mutational scanning data☆15Apr 5, 2026Updated 2 months ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Feb 12, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆38Aug 18, 2023Updated 2 years ago
- The C. elegans transcriptome at single cell resolution☆11Mar 28, 2018Updated 8 years ago
- ☆16Sep 29, 2025Updated 9 months ago
- A Python API for managing genotype-phenotype map data☆12Aug 18, 2023Updated 2 years ago
- ☆17Mar 22, 2022Updated 4 years ago
- Human Primary T cells: A Practical Guide☆15Sep 18, 2018Updated 7 years ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆42Sep 16, 2025Updated 9 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- Python Toolbox For Rosetta Silent Files Processing☆16May 23, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 9 years ago
- ☆13May 27, 2025Updated last year
- MHC class II binding prediction☆15Dec 27, 2022Updated 3 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆25Nov 17, 2023Updated 2 years ago
- Improved contact predictions using the recognition of protein like contact patterns.☆14May 18, 2018Updated 8 years ago
- Predict the structure of immune receptor proteins☆60Nov 8, 2024Updated last year
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Apr 28, 2026Updated 2 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 3 weeks ago
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆17May 2, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations☆11Sep 18, 2025Updated 9 months ago
- ☆20Jun 15, 2024Updated 2 years ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- AlphaFold2 and RoseTTAFold predictions of the SARS-CoV-2 B.1.1.529 variant Spike protein with HADDOCK antibody interactions☆12Feb 10, 2023Updated 3 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆58Aug 9, 2015Updated 10 years ago
- Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates☆21Nov 8, 2024Updated last year
- HOT regions paper☆11Jun 18, 2019Updated 7 years ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆27Dec 16, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Software for article "Deep learning to predict the lab-of-origin of engineered DNA"☆13Aug 7, 2018Updated 7 years ago
- ☆13Apr 1, 2026Updated 3 months ago
- ☆10May 8, 2026Updated last month
- ☆13Jun 16, 2026Updated 2 weeks ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆32Jan 22, 2016Updated 10 years ago
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated last year
- ☆12Sep 19, 2016Updated 9 years ago