pjsample / human_5utr_modelingLinks
Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
☆48Updated 5 years ago
Alternatives and similar repositories for human_5utr_modeling
Users that are interested in human_5utr_modeling are comparing it to the libraries listed below
Sorting:
- HLA-II ligand predictor.☆43Updated 2 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆48Updated 10 months ago
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆21Updated 11 months ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆53Updated 3 years ago
- ☆74Updated last year
- Computational Optimization of DNA Activity (CODA)☆60Updated 2 months ago
- Code for 5UTR project☆24Updated 2 years ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆59Updated last week
- ☆34Updated last month
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆37Updated last month
- python tools for TCR:peptide-MHC modeling and analysis☆79Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆53Updated last year
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆34Updated 3 years ago
- ☆38Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆32Updated 2 months ago
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 2 years ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆29Updated last year
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆39Updated this week
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆28Updated 3 years ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆80Updated 2 weeks ago
- Predicting gene expression levels from genomic sequences☆53Updated 5 years ago
- MHC Class I and Class II neoantigen binding prediction☆29Updated 2 years ago
- ☆29Updated 4 months ago
- HLA-I ligand predictor☆40Updated 6 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆43Updated 7 months ago
- Functional Embedding of Gene Signatures☆45Updated last year
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆26Updated 2 months ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆32Updated 3 years ago