varnivey / ipanda
insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis method that aids interpretation of large-scale gene expression data. The method introduced here includes coexpression analysis and gene importance estimation to robustly identify relevant pathways and biomarke…
☆25Updated 7 years ago
Related projects: ⓘ
- HLA-II ligand predictor.☆34Updated last year
- Knowledge-primed neural networks☆34Updated last year
- predicting peptide and TCR interaction☆20Updated 3 years ago
- CMap Notebooks for LINCS 2020 Workshop☆45Updated 2 years ago
- Predicting gene expression levels from genomic sequences☆48Updated 4 years ago
- MHC Class I and Class II neoantigen binding prediction☆26Updated last year
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆34Updated 2 years ago
- This is the public repository for the EPIC tool.☆17Updated 2 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆23Updated 10 months ago
- Python package and command line tool for epitope prediction☆48Updated last month
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆45Updated 2 years ago
- Code for the analyses in the human reference interactome paper.☆26Updated last year
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆25Updated 7 years ago
- ☆38Updated 9 months ago
- ☆37Updated 4 years ago
- A unified framework of perturbation and gradient-based attribution methods for Deep Neural Networks interpretability☆8Updated 5 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆61Updated 3 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- Code and data used in The Great Repertoire Project☆29Updated 3 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 2 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆39Updated last year
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆34Updated 2 years ago
- Deep learning model to predict degron sequences☆18Updated last year
- Package to Score Sequences using Rule Set 3☆11Updated 6 months ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆41Updated 5 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆32Updated 2 years ago
- ☆10Updated 2 years ago
- repository containing analysis scripts and auxiliary files☆29Updated 4 years ago