varnivey / ipanda
insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis method that aids interpretation of large-scale gene expression data. The method introduced here includes coexpression analysis and gene importance estimation to robustly identify relevant pathways and biomarke…
☆25Updated 8 years ago
Alternatives and similar repositories for ipanda:
Users that are interested in ipanda are comparing it to the libraries listed below
- HLA-II ligand predictor.☆43Updated 2 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆46Updated 2 years ago
- Knowledge-primed neural networks☆36Updated 2 years ago
- Code for the analyses in the human reference interactome paper.☆27Updated 2 years ago
- Predicting gene expression levels from genomic sequences☆52Updated 4 years ago
- predicting peptide and TCR interaction☆20Updated 4 years ago
- MHC Class I and Class II neoantigen binding prediction☆29Updated 2 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- This is the public repository for the EPIC tool.☆17Updated 2 years ago
- ☆38Updated 4 years ago
- Python interface to running command-line and web-based MHC binding predictors☆96Updated 6 months ago
- ☆37Updated last year
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆41Updated 2 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆80Updated 2 months ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- ☆33Updated 2 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- ☆47Updated 2 years ago
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- CMap Notebooks for LINCS 2020 Workshop☆46Updated 3 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆81Updated 7 months ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆45Updated 5 years ago
- HLA-I ligand predictor☆37Updated 3 months ago
- Python package and command line tool for epitope prediction☆51Updated 8 months ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 8 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆40Updated 8 years ago