Alternatives and similar repositories for ipanda:

Users that are interested in ipanda are comparing it to the libraries listed below

• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆35Updated 3 years ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆35Updated last year
• masato-ogishi / Repitope
  Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
  ☆24Updated last year
• IdoSpringer / ERGO
  ERGO is a deep learing based model for predicting TCR-peptide binding.
  ☆17Updated 2 years ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆51Updated 4 years ago
• mickaelleclercq / BioDiscML
  Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data
  ☆28Updated 9 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆38Updated last year
• GreiffLab / immuneSIM
  ☆37Updated last year
• cssblab / iOmicsPASS
  Data Integration tool utilizing network information for predictive analyses
  ☆16Updated last year
• KarchinLab / mhcnuggets
  MHC Class I and Class II neoantigen binding prediction
  ☆26Updated last year
• JanZrimec / DeepExpression
  ☆33Updated 2 years ago
• mnielLab / netTCR
  predicting peptide and TCR interaction
  ☆20Updated 4 years ago
• gpp-rnd / rs3
  Package to Score Sequences using Rule Set 3
  ☆11Updated 11 months ago
• cmap / lincs-workshop-2020
  CMap Notebooks for LINCS 2020 Workshop
  ☆45Updated 3 years ago
• BaderLab / EPIC
  This is the public repository for the EPIC tool.
  ☆17Updated 2 years ago
• s175573 / DeepCAT
  Deep Learning Method to Identify Cancer Associated TCRs
  ☆45Updated 2 years ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆51Updated 5 months ago
• MaayanLab / biojupies-plugins
  User-submitted RNA-seq data analysis tools for BioJupies.
  ☆19Updated 3 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 2 years ago
• CCSB-DFCI / HuRI_paper
  Code for the analyses in the human reference interactome paper.
  ☆26Updated 2 years ago
• zwang-bioinformatics / GOGO
  An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms
  ☆17Updated 4 years ago
• SBRG / Recon3D
  A 3-Dimensional View of Human Metabolism and Disease
  ☆26Updated 6 years ago
• Genentech / Absolve
  Absolve antibody variable domain sequence analysis
  ☆16Updated 6 years ago
• cstoeckert / iterativeWGCNA
  Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.
  ☆61Updated 3 years ago
• jiujiezz / deephlapan
  A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…
  ☆41Updated last year
• uci-cbcl / HLA-bind
  Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction
  ☆25Updated 7 years ago
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆30Updated 4 years ago
• hart-lab / drugz
  DRUGZ software
  ☆23Updated 3 years ago
• verilylifesciences / deepmass
  DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.
  ☆47Updated 3 years ago
• crowelab / PyIR
  Immunoglobulin and T-Cell receptor rearrangement software
  ☆47Updated last year