OATML / EVELinks
Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.
☆67Updated 2 years ago
Alternatives and similar repositories for EVE
Users that are interested in EVE are comparing it to the libraries listed below
Sorting:
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆48Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆50Updated 6 years ago
- Evolutionary velocity with protein language models☆94Updated last year
- ☆76Updated last year
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆39Updated last month
- Diverse Genomic Embedding Benchmark☆46Updated 5 months ago
- Fully convolutional deep learning variant effect predictor architecture☆23Updated last year
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 8 years ago
- GraphPart, a data partitioning method for ML on biological sequences☆29Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆72Updated 2 years ago
- Cross-protein transfer learning for variant effect prediction☆20Updated last year
- Comprehensive Python client for the Uniprot REST API☆51Updated 2 months ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- Mutation effects predicted from sequence co-variation☆68Updated 7 years ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆62Updated last year
- Python package and command line tool for epitope prediction☆52Updated last year
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Draw RNA secondary structures in python.☆48Updated 2 months ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆30Updated 2 years ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆95Updated 2 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 3 years ago
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆22Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Code repository for the SPOC tool for scoring binary AF-M predicitons.☆13Updated 3 months ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆41Updated last year
- ☆21Updated 2 years ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 6 years ago