Promoter activity measurement and modeling; artificial promoter design and testing
☆13Mar 24, 2023Updated 3 years ago
Alternatives and similar repositories for promoter_design
Users that are interested in promoter_design are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The code for paper "Synthetic Promoter Design in Escherichia coli based on Deep Genera-tive Network"☆29Nov 11, 2019Updated 6 years ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆103Jan 31, 2026Updated 2 months ago
- Learning with uncertainty for biological discovery and design☆34Mar 24, 2023Updated 3 years ago
- PlaNet: Predicting population response to drugs via clinical knowledge graph☆32Mar 13, 2025Updated last year
- Diverse Genomic Embedding Benchmark☆50Sep 4, 2025Updated 6 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Oct 25, 2021Updated 4 years ago
- NRPSpredictor2 is a program to predict the specificity of bacterial and fungal adenylation domains.☆11Oct 7, 2019Updated 6 years ago
- A Model Context Protocol (MCP) server that provides access to the Protein Data Bank (PDB) - the worldwide repository of information about…☆22Dec 21, 2025Updated 3 months ago
- Recipe for building OpenSim 4.4+ conda packages☆11Feb 26, 2026Updated last month
- Saluki, a method to predict mRNA half-lives from sequence☆27Oct 7, 2022Updated 3 years ago
- A collection of open source bioinformatics tools developed and used by Addgene.☆11Sep 9, 2025Updated 6 months ago
- Create NNN primers tiling codons of a gene for codon mutagenesis☆14Jan 13, 2021Updated 5 years ago
- ☆11May 3, 2017Updated 8 years ago
- Trinotate annotation report summaries in R☆13Feb 24, 2016Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- ☆13Feb 22, 2022Updated 4 years ago
- Fitness landscape exploration sandbox for biological sequence design.☆170Feb 16, 2023Updated 3 years ago
- A Microbiology-based Rogue-Like Game written in Lua via Love2D☆13Jul 24, 2021Updated 4 years ago
- Simple tokenised template system for SGE☆10Mar 1, 2023Updated 3 years ago
- ☆21Oct 22, 2024Updated last year
- Gene Set Enrichment Analysis in Python☆11Oct 26, 2018Updated 7 years ago
- ☆32Mar 3, 2024Updated 2 years ago
- ☆14Dec 16, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆43Jan 10, 2026Updated 2 months ago
- 机器学习(Machine Learning)、深度学习(Deep Learning)、对抗神经网络(GAN），图神经网络（GNN），NLP，大数据相关的发展路书(roadmap), 并附海量源码（python，pytorch）带大家消化基本知识点，突破面试，完成从新手到合格…☆10Feb 25, 2020Updated 6 years ago
- Unsupervised fingerprinting of disordered solids leading to analogical materials discovery.☆10Feb 14, 2023Updated 3 years ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Jul 11, 2023Updated 2 years ago
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆10Feb 6, 2025Updated last year
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- ☆16May 22, 2025Updated 10 months ago
- Quantitative analysis of native tRNA populations using direct RNA nanopore sequencing (Lucas*, Pryszcz* et al., Nat Biotech 2023)☆16Sep 19, 2024Updated last year
- Deep learning prediction of protein residue-residue distances☆23Jun 28, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆17Nov 19, 2025Updated 4 months ago
- ☆15May 16, 2019Updated 6 years ago
- cfid: R package for identifying counterfactuals.☆11Dec 11, 2025Updated 3 months ago
- 📦 A Command Line Tool for downloading protein structures, sequences and MSAs☆10Nov 21, 2017Updated 8 years ago
- The MolE pre-training framework to learn general molecular representations from unlabeled structures☆12May 26, 2025Updated 10 months ago
- RNA sequence design for a target protein sequence☆13Mar 12, 2026Updated 2 weeks ago
- Code in support of the paper Continuous Mixtures of Tractable Probabilistic Models☆12Oct 12, 2024Updated last year