Alternatives and similar repositories for promoter_design

Users that are interested in promoter_design are comparing it to the libraries listed below

• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆49Updated 6 years ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆40Updated 2 weeks ago
• ntranoslab / esm-variants
  ☆74Updated last year
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆50Updated last month
• TattaBio / DGEB
  Diverse Genomic Embedding Benchmark
  ☆46Updated 3 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆44Updated 2 years ago
• Illumina / PrimateAI-3D
  ☆66Updated 4 months ago
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆74Updated last month
• hawkjo / freebarcodes
  FREE Divergence Error-Correcting DNA Barcodes
  ☆27Updated 5 months ago
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated last year
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆89Updated 5 months ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• castillohair / paper-5utr-design
  Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"
  ☆21Updated last year
• dmaticzka / GraphProt
  GraphProt: modelling binding preferences of RNA-binding proteins
  ☆21Updated 6 years ago
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆35Updated 2 years ago
• DennisGankin / species-aware-DNA-LM
  Species-aware DNA language modeling
  ☆18Updated 2 years ago
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆52Updated 4 months ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆48Updated 11 months ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated last year
• saketkc / pyseqlogo
  Python package to plot sequence logos
  ☆29Updated last year
• vagarwal87 / saluki_paper
  Saluki, a method to predict mRNA half-lives from sequence
  ☆25Updated 2 years ago
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆37Updated 2 weeks ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• Illumina / PromoterAI
  ☆62Updated 3 weeks ago
• RTH-tools / crisproff
  off-targeting assessment of Cas9 gRNAs
  ☆13Updated 4 years ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆53Updated 5 years ago
• mhorlacher / rbpnet
  ☆18Updated last year
• HaochenW / Deep_promoter
  The code for paper "Synthetic Promoter Design in Escherichia coli based on Deep Genera-tive Network"
  ☆26Updated 5 years ago
• JinsenLi / deepDNAshape
  A method to predict DNA shape features considering farther flanking region.
  ☆33Updated 9 months ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆46Updated 5 years ago