smolkelab / promoter_designLinks
Promoter activity measurement and modeling; artificial promoter design and testing
☆13Updated 2 years ago
Alternatives and similar repositories for promoter_design
Users that are interested in promoter_design are comparing it to the libraries listed below
Sorting:
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆55Updated 6 years ago
- HLA-II ligand predictor.☆45Updated 2 years ago
- Comprehensive Python client for the Uniprot REST API☆54Updated 2 months ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆43Updated last week
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 4 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆43Updated 5 months ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- ☆85Updated 2 years ago
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆23Updated last year
- A method to predict DNA shape features considering farther flanking region.☆38Updated last year
- iCodon customizes gene expression based on the codon composition☆15Updated 2 years ago
- HLA-I ligand predictor☆43Updated 3 months ago
- GraphProt: modelling binding preferences of RNA-binding proteins☆20Updated 7 years ago
- Predicting gene expression levels from genomic sequences☆55Updated 5 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆83Updated last year
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆77Updated last month
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Updated 2 years ago
- We present Envision, an accurate predictor of protein variant molecular effect, trained using large-scale experimental mutagenesis data. …☆19Updated 7 years ago
- ☆72Updated last month
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆58Updated last week
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 3 years ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆61Updated last week
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆31Updated 2 years ago
- ☆33Updated 3 years ago
- Models, design algorithms, and other software related to Salis lab publications☆35Updated last year
- Feature map and function annotation of Proteins☆34Updated last year
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Updated 3 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 3 years ago
- Diverse Genomic Embedding Benchmark☆50Updated 3 months ago
- Species-aware DNA language modeling☆18Updated 2 years ago