smolkelab / promoter_design
Promoter activity measurement and modeling; artificial promoter design and testing
☆12Updated last year
Alternatives and similar repositories for promoter_design:
Users that are interested in promoter_design are comparing it to the libraries listed below
- FREE Divergence Error-Correcting DNA Barcodes☆27Updated 2 weeks ago
- Modelling insertion efficiency for Prime Insertion Experiments☆13Updated 10 months ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆44Updated 5 years ago
- ☆15Updated 7 months ago
- Comprehensive Python client for the Uniprot REST API☆45Updated 6 months ago
- Saluki, a method to predict mRNA half-lives from sequence☆22Updated 2 years ago
- iCodon customizes gene expression based on the codon composition☆14Updated last year
- Python port of the R Bioconductor `seqLogo` package☆33Updated 6 months ago
- ☆18Updated 11 months ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆36Updated last week
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆17Updated 7 months ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 2 years ago
- Diverse Genomic Embedding Benchmark☆39Updated 4 months ago
- off-targeting assessment of Cas9 gRNAs☆13Updated 3 years ago
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆14Updated 7 years ago
- Knowledge-primed neural networks☆35Updated last year
- Comparison of Adaptive Immune Receptor Repertoires☆26Updated 3 weeks ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆68Updated last week
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆38Updated last month
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆28Updated last month
- Predicting gene expression levels from genomic sequences☆51Updated 4 years ago
- A method to predict DNA shape features considering farther flanking region.☆26Updated 4 months ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 5 years ago
- Scripts for building computational models of gene regulation with tensorflow☆10Updated 5 years ago
- Analysis of antibody NGS data☆12Updated 2 years ago
- ☆37Updated last year
- Cross-protein transfer learning for variant effect prediction☆19Updated last year
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆24Updated 2 years ago
- Code and data used in The Great Repertoire Project☆30Updated 3 years ago