rajewsky-lab / mirdeep2Links
Discovering known and novel miRNAs from small RNA sequencing data
☆158Updated last month
Alternatives and similar repositories for mirdeep2
Users that are interested in mirdeep2 are comparing it to the libraries listed below
Sorting:
- ☆157Updated 8 months ago
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆250Updated this week
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆178Updated last month
- RNA-Seq analysis workflow☆105Updated 4 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆259Updated 4 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆175Updated last year
- ☆157Updated 3 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆107Updated this week
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆223Updated last week
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆187Updated last week
- A small-RNA sequencing analysis pipeline☆98Updated 3 weeks ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆230Updated 6 months ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆276Updated 2 months ago
- Web application to explore the Sequence Read Archive.☆218Updated 6 months ago
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆160Updated last month
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysi…☆141Updated 8 months ago
- A collection of scripts and notes related to genomics and bioinformatics☆219Updated last month
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆165Updated 2 weeks ago
- Script to automatically create and run IGV snapshot batchscripts☆142Updated 3 years ago
- Generate IGV style locus tracks from bigWig files in R☆177Updated last year
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆265Updated 6 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆256Updated 6 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 7 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 4 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆149Updated last week
- circular RNA analysis toolset☆87Updated last year