RNASeq pipeline
☆36Oct 28, 2019Updated 7 years ago
Alternatives and similar repositories for RNASeq
Users that are interested in RNASeq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Mar 13, 2017Updated 9 years ago
- Illumina analysis pipeline☆14Apr 6, 2020Updated 6 years ago
- ☆11Aug 3, 2018Updated 8 years ago
- nRex: Germline and somatic single-nucleotide, short indel and structural variant calling☆12Sep 19, 2025Updated last year
- This repo contains tutorials for different NGS analysis methods☆13Nov 29, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Predicting oncogenic potential of gene fusions☆12Feb 13, 2016Updated 10 years ago
- Archive of original RNAseq.wiki tutorial that accompanied PLoS Comp Bio paper☆13Nov 13, 2016Updated 9 years ago
- Papillomavirus genome annotation tool☆10May 2, 2023Updated 3 years ago
- Statistical Analysis of RNA-Seq Tools☆109Sep 4, 2026Updated last month
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆24Sep 2, 2026Updated 2 months ago
- Mutation Spectra Analysis☆10Mar 15, 2018Updated 8 years ago
- NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization☆33Apr 19, 2020Updated 6 years ago
- BreakID: genomics breakpoints identification to detect gene fusion events using discordant pairs and split read☆12Jun 17, 2020Updated 6 years ago
- ☆16Sep 20, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Supporting code and materials for GATK gCNV publication☆12Jul 13, 2022Updated 4 years ago
- R package for bcbio RNA-seq analysis.☆64Sep 9, 2024Updated 2 years ago
- CircAST is a computational tool for circular RNA full-length assembly and quantification using RNA-Seq data.☆10Jun 17, 2021Updated 5 years ago
- ☆11Aug 6, 2019Updated 7 years ago
- finding conserved regions in highly diverse genomes☆16May 25, 2026Updated 5 months ago
- Fully Automated and Standardized (FAST) iCLIP analysis pipeline.☆21Oct 7, 2017Updated 9 years ago
- SigMa is a probabilistic model for the sequential dependencies of mutation signatures☆17Jul 27, 2019Updated 7 years ago
- An Automated RNASeq Analysis Pipeline (Differential expression to gene enrichment)☆10Oct 25, 2021Updated 5 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Jul 26, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An attempt to make HLA typing from OxfordNanopore reads (MinION platform)☆13Aug 20, 2018Updated 8 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆95Jul 18, 2017Updated 9 years ago
- ☆169Apr 13, 2026Updated 6 months ago
- Lightweight pipeline for processing droplet-based single-cell RNA-seq data☆18Nov 4, 2020Updated 5 years ago
- A repository for setting up a RNAseq workflow☆459Apr 10, 2017Updated 9 years ago
- RNA-Seq pipeline☆36Jul 22, 2015Updated 11 years ago
- NGS perl modules☆10Updated this week
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆52Aug 9, 2025Updated last year
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆173Aug 25, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆26Dec 4, 2019Updated 6 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 10 years ago
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 11 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 5 years ago
- ☆10Oct 23, 2024Updated 2 years ago
- ☆10May 17, 2017Updated 9 years ago