RNASeq pipeline
☆36Oct 28, 2019Updated 6 years ago
Alternatives and similar repositories for RNASeq
Users that are interested in RNASeq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Mar 13, 2017Updated 9 years ago
- Illumina analysis pipeline☆14Apr 6, 2020Updated 6 years ago
- This repo contains tutorials for different NGS analysis methods☆13Nov 29, 2021Updated 4 years ago
- ☆11Aug 3, 2018Updated 7 years ago
- Predicting oncogenic potential of gene fusions☆13Feb 13, 2016Updated 10 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Mutation Spectra Analysis☆10Mar 15, 2018Updated 8 years ago
- Statistical Analysis of RNA-Seq Tools☆111Oct 9, 2025Updated 9 months ago
- ☆11Aug 6, 2019Updated 6 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆95Jul 18, 2017Updated 9 years ago
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆167Jul 17, 2026Updated last week
- nRex: Germline and somatic single-nucleotide, short indel and structural variant calling☆12Sep 19, 2025Updated 10 months ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- SigMa is a probabilistic model for the sequential dependencies of mutation signatures☆17Jul 27, 2019Updated 6 years ago
- Lightweight pipeline for processing droplet-based single-cell RNA-seq data☆18Nov 4, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- RNA-Seq pipeline☆36Jul 22, 2015Updated 11 years ago
- ☆14May 23, 2016Updated 10 years ago
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Jul 2, 2024Updated 2 years ago
- ☆10Oct 23, 2024Updated last year
- ☆10May 17, 2017Updated 9 years ago
- R package for bcbio RNA-seq analysis.☆64Sep 9, 2024Updated last year
- HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq☆11Sep 1, 2015Updated 10 years ago
- ☆10Aug 12, 2018Updated 7 years ago
- Repo for a workshops and presentations about ROS2 and Python☆12Jun 13, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Advanced R 1-day course taught at the University of Cambridge☆11Jul 6, 2018Updated 8 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆27Oct 5, 2015Updated 10 years ago
- Representation and manipulation of genomic intervals☆47Jul 7, 2026Updated 2 weeks ago
- NGS Tutorial☆15Apr 22, 2017Updated 9 years ago
- A repository for setting up a RNAseq workflow☆458Apr 10, 2017Updated 9 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated last year
- ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps☆23Oct 12, 2017Updated 8 years ago
- See the main fork of this repository here >>>☆39Jun 16, 2026Updated last month
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Jul 30, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- a toolbox for metabolomic data analysis, visualization and ‘omic’ integration☆13Jun 21, 2018Updated 8 years ago
- MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis☆17Nov 7, 2024Updated last year
- Guide to transcriptome assembly & analysis☆21Apr 12, 2017Updated 9 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆22May 8, 2017Updated 9 years ago
- NExt generation Analysis Toolbox☆14Oct 18, 2015Updated 10 years ago
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆86Aug 25, 2020Updated 5 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data. This is a novel R package of the RaceID3 and S…☆44Jun 16, 2026Updated last month