UMCUGenetics / RNASeq
RNASeq pipeline
☆36Updated 5 years ago
Alternatives and similar repositories for RNASeq:
Users that are interested in RNASeq are comparing it to the libraries listed below
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- phasing and Allele Specific Expression from RNA-seq☆112Updated 9 months ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆70Updated 4 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 2 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆68Updated 7 months ago
- Characterization of Germline variants☆98Updated 3 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆45Updated 7 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆97Updated 11 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆97Updated 2 years ago
- ☆41Updated last year
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- ☆68Updated 2 years ago
- Comprehensive benchmark of structural variant callers☆46Updated 4 years ago
- The wiki repo, with pull request enabled, for the rnaseq_tutorial☆26Updated 4 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated last year
- Gene Fusion Visualiser☆51Updated 2 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆108Updated 4 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆80Updated 4 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆46Updated last week
- FEELnc : FlExible Extraction of LncRNA☆87Updated 7 months ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- optimization of ribosome P-site positioning in ribosome profiling data☆51Updated 2 months ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆127Updated 8 months ago
- Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.☆57Updated 9 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last month
- CNV screening and annotation tool☆25Updated 8 years ago
- Software for Quantifying Interspersed Repeat Expression☆55Updated 2 years ago