UMCUGenetics / RNASeqLinks
RNASeq pipeline
☆36Updated 5 years ago
Alternatives and similar repositories for RNASeq
Users that are interested in RNASeq are comparing it to the libraries listed below
Sorting:
- Characterization of Germline variants☆98Updated 3 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- ☆69Updated 3 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 4 years ago
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Updated 8 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- ☆44Updated 6 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆74Updated 11 months ago
- R package for bcbio RNA-seq analysis.☆62Updated 11 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- R Package for Non Invasive Prenatal Testing (NIPT) analysis☆41Updated 5 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆49Updated this week
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 6 years ago
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆57Updated 4 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆87Updated 5 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆51Updated 3 years ago
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated 2 months ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 6 months ago
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated last year
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago
- Identifying recurrent mutations in cancer☆37Updated 4 years ago
- Tumor Mutational Burden☆61Updated last month
- Burden testing against public controls☆50Updated last year
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- Detect and visualize microsatellite instability(MSI) from NGS data☆32Updated 6 years ago