RNASeq pipeline
☆36Oct 28, 2019Updated 6 years ago
Alternatives and similar repositories for RNASeq
Users that are interested in RNASeq are comparing it to the libraries listed below
Sorting:
- Illumina analysis pipeline☆14Apr 6, 2020Updated 5 years ago
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Mar 13, 2017Updated 8 years ago
- Mutation Spectra Analysis☆10Mar 15, 2018Updated 7 years ago
- ☆11Aug 3, 2018Updated 7 years ago
- ☆11Aug 6, 2019Updated 6 years ago
- RNA-Seq pipeline☆35Jul 22, 2015Updated 10 years ago
- Blacktie: a streamlined interface to the popular tophat/cufflinks RNA-seq pipeline☆26Oct 5, 2015Updated 10 years ago
- Pipeline for Illumina shotgun sequencing of 16S rRNA amplicon sequences☆14Sep 2, 2016Updated 9 years ago
- Predicting oncogenic potential of gene fusions☆12Feb 13, 2016Updated 10 years ago
- ☆14May 23, 2016Updated 9 years ago
- HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq☆11Sep 1, 2015Updated 10 years ago
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Jul 2, 2024Updated last year
- Statistical Analysis of RNA-Seq Tools☆108Oct 9, 2025Updated 4 months ago
- This repo contains tutorials for different NGS analysis methods☆13Nov 29, 2021Updated 4 years ago
- ☆13Mar 11, 2019Updated 6 years ago
- RNA Fusion Detection and Quantification☆18Oct 31, 2018Updated 7 years ago
- An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study☆104Jul 1, 2022Updated 3 years ago
- a toolbox for metabolomic data analysis, visualization and ‘omic’ integration☆13Jun 21, 2018Updated 7 years ago
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆87Aug 25, 2020Updated 5 years ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆16Jun 17, 2020Updated 5 years ago
- See the main fork of this repository here >>>☆39Feb 12, 2026Updated 2 weeks ago
- SigMa is a probabilistic model for the sequential dependencies of mutation signatures☆17Jul 27, 2019Updated 6 years ago
- ☆19Jul 6, 2023Updated 2 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21May 8, 2017Updated 8 years ago
- The Microbial Co-occurrence Network Explorer☆21Oct 17, 2023Updated 2 years ago
- tools to find circRNAs in RNA-seq data☆45Nov 16, 2017Updated 8 years ago
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆23Jan 31, 2026Updated last month
- Population genetics analyses☆23Oct 10, 2019Updated 6 years ago
- Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies☆26Feb 28, 2023Updated 3 years ago
- An R Interface to the ImmuneSpace database portal☆24Nov 28, 2023Updated 2 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆94Jul 18, 2017Updated 8 years ago
- ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps☆23Oct 12, 2017Updated 8 years ago
- Identification of differential RNA modifications from nanopore direct RNA sequencing☆163Nov 7, 2024Updated last year
- Lightweight pipeline for processing droplet-based single-cell RNA-seq data☆18Nov 4, 2020Updated 5 years ago
- Assign taxonomic ranks based on evolutionary divergence.☆23Updated this week
- Gene Fusion Visualiser☆51Jan 15, 2023Updated 3 years ago
- Characterization of Germline variants☆100Mar 15, 2022Updated 3 years ago
- (No maintenance) Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated☆24Aug 10, 2017Updated 8 years ago
- Scripts + data to recreate analyses published on http://benjaminlmoore.wordpress.com and http://blm.io☆33Nov 3, 2015Updated 10 years ago