UMCUGenetics / RNASeqLinks
RNASeq pipeline
☆36Updated 5 years ago
Alternatives and similar repositories for RNASeq
Users that are interested in RNASeq are comparing it to the libraries listed below
Sorting:
- identifying mutational significance in cancer genomes☆61Updated 2 years ago
- Characterization of Germline variants☆98Updated 3 years ago
- Documenting usage and experience with bioinformatic tools☆40Updated 9 years ago
- Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.☆57Updated last year
- ☆69Updated 3 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆54Updated 4 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- R Package for Non Invasive Prenatal Testing (NIPT) analysis☆41Updated 5 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- ☆41Updated last year
- Microsatellite Analysis for Normal-Tumor InStability☆73Updated 3 years ago
- xHLA: Fast and accurate HLA typing from short read sequence data☆113Updated last year
- Burden testing against public controls☆50Updated last year
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆111Updated 2 years ago
- Tumor Mutational Burden☆62Updated last week
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆110Updated 4 months ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆86Updated last month
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 6 years ago
- Clinical interpretation of somatic mutations in cancer☆47Updated 5 months ago
- A tool for the calculation of RNA-editing index for RNA seq data☆43Updated last year
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- Copy number calling and variant classification using targeted short read sequencing☆137Updated 3 months ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆113Updated 6 years ago
- ☆44Updated 6 years ago
- Detection of viruses from RNA-Seq on human samples☆45Updated 2 years ago
- ☆116Updated last year
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆66Updated 2 years ago
- Python for HLA analysis: summary, association analysis, zygosity test and interaction test☆34Updated last year