Alternatives and similar repositories for Learn-Bioinformatics-by-RNA-seq:

Users that are interested in Learn-Bioinformatics-by-RNA-seq are comparing it to the libraries listed below

• WGLab / dragonstar2019
  ☆135Updated 5 years ago
• jmzeng1314 / NGS-pipeline
  By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline
  ☆320Updated 6 years ago
• jmzeng1314 / my-R
  a small collection for my R scripts
  ☆165Updated 5 years ago
• ShujiaHuang / ilus
  A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysi…
  ☆130Updated last month
• Ming-Lian / NGS-analysis
  二代测序数据分析
  ☆354Updated last year
• ENCODE-DCC / rna-seq-pipeline
  ☆146Updated 2 years ago
• WeiSong-bio / jmzeng1314-5years-summarize
  ☆117Updated 5 years ago
• shenlab-sinai / ngsplot
  Quick mining and visualization of NGS data by integrating genomic databases
  ☆262Updated last year
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆136Updated 4 years ago
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆141Updated 5 months ago
• Xinglab / rmats-turbo
  ☆237Updated 2 months ago
• snakemake-workflows / dna-seq-gatk-variant-calling
  This Snakemake pipeline implements the GATK best-practices workflow
  ☆245Updated last year
• jmzeng1314 / my_WGCNA
  ☆274Updated 5 years ago
• ENCODE-DCC / chip-seq-pipeline2
  ENCODE ChIP-seq pipeline
  ☆252Updated 11 months ago
• suhrig / arriba
  Fast and accurate gene fusion detection from RNA-Seq data
  ☆231Updated 2 months ago
• nf-core / atacseq
  ATAC-seq peak-calling and QC analysis pipeline
  ☆195Updated this week
• snakemake-workflows / rna-seq-star-deseq2
  RNA-seq workflow using STAR and DESeq2
  ☆333Updated 5 months ago
• mhammell-laboratory / TEtranscripts
  A package for including transposable elements in differential enrichment analysis of sequencing datasets.
  ☆238Updated 3 months ago
• nservant / HiC-Pro
  HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
  ☆392Updated 10 months ago
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆424Updated 7 years ago
• jmzeng1314 / 5years
  ☆231Updated 5 years ago
• hbctraining / Intro-to-rnaseq-hpc-O2
  This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
  ☆166Updated 3 years ago
• rvalieris / parallel-fastq-dump
  parallel fastq-dump wrapper
  ☆286Updated last year
• Boyle-Lab / Blacklist
  Application for making ENCODE Blacklists
  ☆283Updated 3 years ago
• ENCODE-DCC / atac-seq-pipeline
  ENCODE ATAC-seq pipeline
  ☆400Updated 6 months ago
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆293Updated 2 years ago
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆442Updated 4 years ago
• YuLab-SMU / ChIPseeker
  ChIP peak Annotation, Comparison and Visualization
  ☆233Updated this week
• hbctraining / DGE_workshop_salmon_online
  ☆186Updated 3 months ago
• nf-core / chipseq
  ChIP-seq peak-calling, QC and differential analysis pipeline.
  ☆203Updated this week