Alternatives and similar repositories for GEO

Users that are interested in GEO are comparing it to the libraries listed below

• hbctraining / scRNA-seq
  ☆588Updated 4 years ago
• jmzeng1314 / tcga_example
  ☆293Updated 6 years ago
• jmzeng1314 / scRNA_smart_seq2
  ☆314Updated 6 years ago
• jmzeng1314 / 5years
  ☆250Updated 6 years ago
• zhanghao-njmu / SCP
  An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
  ☆582Updated last year
• hbctraining / Intro-to-scRNAseq
  ☆633Updated 7 months ago
• jmzeng1314 / my_WGCNA
  ☆289Updated 6 years ago
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆445Updated 8 years ago
• Starlitnightly / omicverse
  A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
  ☆774Updated this week
• jmzeng1314 / NGS-pipeline
  By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline
  ☆329Updated 6 years ago
• hemberg-lab / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆676Updated 3 years ago
• genecell / single-cell-papers-with-code
  Papers with code for single cell related papers
  ☆297Updated 2 years ago
• Starlitnightly / single_cell_tutorial
  单细胞分析的中文pipeline
  ☆259Updated last year
• YuLab-SMU / clusterProfiler
  A universal enrichment tool for interpreting omics data
  ☆1,139Updated 2 weeks ago
• mdozmorov / scRNA-seq_notes
  A list of scRNA-seq analysis tools
  ☆752Updated last month
• jmzeng1314 / R_bilibili
  ☆170Updated 6 years ago
• MareesAT / GWA_tutorial
  A comprehensive tutorial about GWAS and PRS
  ☆945Updated 2 years ago
• crazyhottommy / ChIP-seq-analysis
  ChIP-seq analysis notes from Ming Tang
  ☆830Updated last year
• Ming-Lian / NGS-analysis
  二代测序数据分析
  ☆377Updated last year
• theislab / single-cell-tutorial
  Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…
  ☆1,527Updated 2 years ago
• omnideconv / immunedeconv
  A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…
  ☆510Updated last week
• gao-lab / Guideline-for-Computational-Biology-and-Bioinformatics
  ☆367Updated 6 months ago
• jinworks / CellChat
  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
  ☆490Updated last month
• broadinstitute / infercnv
  Inferring CNV from Single-Cell RNA-Seq
  ☆646Updated 9 months ago
• junjunlab / scRNAtoolVis
  Useful functions to make your scRNA-seq plot more cool!
  ☆364Updated 5 months ago
• crazyhottommy / RNA-seq-analysis
  RNAseq analysis notes from Ming Tang
  ☆1,050Updated 4 years ago
• mousepixels / sanbomics_scripts
  scripts and notebooks from sanbomics
  ☆448Updated 11 months ago
• Cloufield / GWASTutorial
  GWAS Tutorial for Beginners
  ☆346Updated last month
• aertslab / pySCENIC
  pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…
  ☆553Updated 4 months ago
• aertslab / SCENIC
  SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
  ☆468Updated last year