Kingsford-Group / omhismb2019
☆23Updated last year
Alternatives and similar repositories for omhismb2019:
Users that are interested in omhismb2019 are comparing it to the libraries listed below
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆50Updated last week
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆59Updated last year
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- ☆17Updated last year
- Benchmarking pairwise aligners☆36Updated 3 months ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆16Updated 5 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Paired reads mapping on de Bruijn graph☆13Updated 6 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 11 months ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- GFA insert into GenomicSQLite☆49Updated 3 years ago
- ☆28Updated last month
- REINDEER REad Index for abuNDancE quERy☆57Updated 9 months ago
- Efficient, parallel compression for terabyte-scale data☆43Updated 3 months ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 2 years ago
- Fast and accurate set similarity estimation via containment min hash☆42Updated 9 months ago
- A long read simulator based on badread idea☆22Updated 2 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- Iterate over minimizers of a DNA sequence☆29Updated 9 months ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- ☆15Updated last year
- HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs☆17Updated 8 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆24Updated 2 weeks ago