RabbitBio / RabbitKSSDLinks
RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures
☆12Updated last year
Alternatives and similar repositories for RabbitKSSD
Users that are interested in RabbitKSSD are comparing it to the libraries listed below
Sorting:
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Updated last month
- An Fast variant calling tool to detection germline and somatic variants☆11Updated 2 years ago
- ☆16Updated 2 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Updated 2 years ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆36Updated 6 months ago
- A more efficient quality control tool for sequencing data☆31Updated 5 months ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆43Updated 2 years ago
- ☆16Updated 2 years ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Updated 2 years ago
- Validation of sycnmers compared to minimizers☆11Updated 5 months ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆54Updated last year
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆55Updated last week
- Efficient, parallel compression for terabyte-scale data☆52Updated last month
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆67Updated last year
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆27Updated 6 months ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Efficient construction of the BWT using string compression☆20Updated 5 months ago
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 7 months ago
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆51Updated last month
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆55Updated last year
- Self-contained, multi-threaded fasta/q parser☆48Updated last year
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 3 years ago
- K-mer substring space decomposition☆44Updated 2 months ago
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆51Updated 3 years ago
- Parallel Sequence to Graph Alignment☆36Updated 2 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆73Updated 3 years ago
- QuickEd is a high-performance exact sequence alignment based on the bound-and-align paradigm.☆27Updated 6 months ago
- Compressor for Nanopore Sequencing Reads☆22Updated 2 years ago