RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures
☆12Jun 5, 2024Updated 2 years ago
Alternatives and similar repositories for RabbitKSSD
Users that are interested in RabbitKSSD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆54Jun 9, 2026Updated 2 weeks ago
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 4 months ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- DartMinHash: Fast Sketching for Weighted Sets☆12Dec 8, 2025Updated 6 months ago
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ProbMinHash – A Class of Locality-Sensitive Hash Algorithms for the (Probability) Jaccard Similarity☆44Oct 26, 2020Updated 5 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- K-mer substring space decomposition☆44May 27, 2026Updated last month
- A more efficient quality control tool for sequencing data☆33May 27, 2025Updated last year
- ☆15Dec 8, 2022Updated 3 years ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping☆64Jan 22, 2026Updated 5 months ago
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆25Jun 7, 2026Updated 3 weeks ago
- Matlab implementations of communication-avoiding Krylov subspace methods☆12Sep 2, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆17Apr 6, 2023Updated 3 years ago
- ☆22Aug 2, 2023Updated 2 years ago
- ☆24Apr 2, 2021Updated 5 years ago
- ☆23Dec 4, 2023Updated 2 years ago
- Aligns short reads using dynamic seed size with strobemers☆202Updated this week
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆55Updated this week
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆21Jun 22, 2023Updated 3 years ago
- I am currently a Senior Researcher at L3S Research Center, Leibniz University Hannover, Germany.☆24May 17, 2021Updated 5 years ago
- interactive Multi Objective K-mer Analysis☆25Mar 5, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Probabilistic Inference of Molecular Evolution☆10Sep 6, 2021Updated 4 years ago
- genome annotation (RNAseq and TE) pipeline (draft)☆13Apr 20, 2026Updated 2 months ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated 3 months ago
- ☆14Apr 24, 2024Updated 2 years ago
- The new version is available at https://github.com/RabbitBio/RabbitQCPlus☆25Jun 20, 2022Updated 4 years ago
- Fast hash function for DNA/RNA sequences☆108Apr 2, 2026Updated 2 months ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆77Jun 17, 2024Updated 2 years ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 3 years ago
- cuDTW++: Ultra-Fast Dynamic Time Warping on CUDA-enabled GPUs☆34May 11, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Shouji is fast and accurate pre-alignment filter for banded sequence alignment calculation. Described in the Bioinformatics journal paper…☆19Jun 3, 2019Updated 7 years ago
- ☆14Jun 18, 2026Updated last week
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- Test of parallel compression acceleration☆16Sep 8, 2024Updated last year
- Download/merge conference papers, given a URL of conference webpage☆17Sep 27, 2021Updated 4 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 4 months ago
- A repository for generating strobemers and evalaution☆79Apr 16, 2024Updated 2 years ago