RabbitBio / RabbitKSSDLinks
RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures
☆11Updated last year
Alternatives and similar repositories for RabbitKSSD
Users that are interested in RabbitKSSD are comparing it to the libraries listed below
Sorting:
- An Fast variant calling tool to detection germline and somatic variants☆10Updated 2 years ago
- Validation of sycnmers compared to minimizers☆12Updated 3 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆20Updated 2 months ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- A more efficient quality control tool for sequencing data☆29Updated 2 months ago
- ☆11Updated 2 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 2 years ago
- ☆17Updated 2 years ago
- Efficient, parallel compression for terabyte-scale data☆48Updated 3 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- K-mer substring space decomposition☆42Updated last year
- Parallel Sequence to Graph Alignment☆37Updated 2 years ago
- A fuzzy Bruijn graph approach to long noisy reads assembly☆39Updated 8 years ago
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 4 months ago
- GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment☆36Updated 3 months ago
- Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)☆51Updated last year
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆65Updated last year
- BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper☆51Updated 3 years ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆43Updated 2 years ago
- Efficient construction of the BWT using string compression☆18Updated 2 months ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Updated 2 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆73Updated 3 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57Updated last year
- ☆17Updated 4 years ago
- ultrafast structural variation detection from circular consensus sequencing reads☆13Updated 3 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆52Updated 2 weeks ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 4 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 3 months ago