RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures
☆12Jun 5, 2024Updated last year
Alternatives and similar repositories for RabbitKSSD
Users that are interested in RabbitKSSD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆54Updated this week
- An Fast variant calling tool to detection germline and somatic variants☆12Feb 21, 2026Updated 2 months ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- DartMinHash: Fast Sketching for Weighted Sets☆12Dec 8, 2025Updated 4 months ago
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated 11 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ProbMinHash – A Class of Locality-Sensitive Hash Algorithms for the (Probability) Jaccard Similarity☆44Oct 26, 2020Updated 5 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- K-mer substring space decomposition☆44Sep 1, 2025Updated 7 months ago
- A more efficient quality control tool for sequencing data☆33May 27, 2025Updated 11 months ago
- ☆15Dec 8, 2022Updated 3 years ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping☆63Jan 22, 2026Updated 3 months ago
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆24Aug 6, 2025Updated 8 months ago
- Matlab implementations of communication-avoiding Krylov subspace methods☆12Sep 2, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆16Apr 6, 2023Updated 3 years ago
- ☆21Aug 2, 2023Updated 2 years ago
- ☆24Apr 2, 2021Updated 5 years ago
- ☆23Dec 4, 2023Updated 2 years ago
- Aligns short reads using dynamic seed size with strobemers☆195Apr 22, 2026Updated last week
- A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.☆53Apr 4, 2026Updated 3 weeks ago
- Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)☆19Jun 22, 2023Updated 2 years ago
- I am currently a Senior Researcher at L3S Research Center, Leibniz University Hannover, Germany.☆24May 17, 2021Updated 4 years ago
- interactive Multi Objective K-mer Analysis☆24Mar 5, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Probabilistic Inference of Molecular Evolution☆10Sep 6, 2021Updated 4 years ago
- genome annotation (RNAseq and TE) pipeline (draft)☆14Apr 20, 2026Updated last week
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated last month
- ☆14Apr 24, 2024Updated 2 years ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆71Jun 17, 2024Updated last year
- The new version is available at https://github.com/RabbitBio/RabbitQCPlus☆26Jun 20, 2022Updated 3 years ago
- Fast hash function for DNA/RNA sequences☆107Apr 2, 2026Updated 3 weeks ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 2 years ago
- cuDTW++: Ultra-Fast Dynamic Time Warping on CUDA-enabled GPUs☆34May 11, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Benchmarking scripts for Gaia☆15Apr 10, 2025Updated last year
- Shouji is fast and accurate pre-alignment filter for banded sequence alignment calculation. Described in the Bioinformatics journal paper…☆18Jun 3, 2019Updated 6 years ago
- ☆14Oct 27, 2025Updated 6 months ago
- From the comparison of two extant genomes and corresponding gene families, PhylDiag detects conserved segments, i.e. segments of chromoso…☆15Aug 7, 2023Updated 2 years ago
- Test of parallel compression acceleration☆16Sep 8, 2024Updated last year
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 2 months ago
- Download/merge conference papers, given a URL of conference webpage☆17Sep 27, 2021Updated 4 years ago