Alternatives and similar repositories for nmfgpu

Users that are interested in nmfgpu are comparing it to the libraries listed below

• YeWenting / sGLMM
  Implementation for sGLMM (Sparse graph-structured linear mixed model)
  ☆15Updated 2 years ago
• brc7 / DiversitySampling
  ☆10Updated 3 years ago
• QData / GaKCo-SVM
  ECML16: GaKCo: a Fast Gapped k-mer string Kernel using Counting
  ☆14Updated 6 years ago
• cschin / DCNet
  DCNet — Denoising (DNA) Sequence With a LSTM-RNN and PyTorch & Neural DBG
  ☆69Updated 7 years ago
• rmenegaux / fastDNA
  ☆25Updated 4 years ago
• GuillaumeHolley / BlastGraph
  BlastGraph is a new tool for computing intensive approximate pattern matching in a sequence graph or a de-Bruijn graph. Given an oriented…
  ☆12Updated 12 years ago
• nojima / affinity-propagation-sparse
  Affinity Propagation for Sparse Similarities
  ☆21Updated 15 years ago
• PMBio / limix
  We have moved to https://github.com/limix/limix.
  ☆23Updated 8 years ago
• tobc / dartminhash
  DartMinHash: Fast Sketching for Weighted Sets
  ☆12Updated last month
• rezacsedu / Convolutional-embedded-networks
  Convolutional Embedded Networks for Population Scale Clustering and Bio-ancestry Inferencing
  ☆11Updated 6 years ago
• ratschlab / graph_annotation
  Code accompanying the publication for compressed graph annotation
  ☆13Updated 6 years ago
• yifeng-li / DECRES
  Deep learning for identifying cis-regulatory elements and other applications
  ☆34Updated 9 years ago
• gifford-lab / Keras-genomics
  Perform hyper-parameter tuning, training, testing and prediction with Keras
  ☆44Updated 7 years ago
• realbigws / cwDTW
  Continuous Wavelet Dynamic Time Warping for unbalanced global mapping of two signals
  ☆20Updated 6 years ago
• Kingsford-Group / miniception
  ☆14Updated 5 years ago
• arahuja / pytcga
  DEPRECATED: Store and query public TCGA data
  ☆11Updated 9 years ago
• wenjiegroup / PEDLA
  PEDLA: predicting enhancers with deep learning-based algorithmic framework
  ☆16Updated 10 years ago
• richarddurbin / hash10x
  a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly
  ☆15Updated 6 years ago
• p-koo / learning_sequence_motifs
  "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy
  ☆34Updated 6 years ago
• csirac / dynamicDBG
  Practical Dynamic de Bruijn Graphs
  ☆18Updated 5 years ago
• ruhulsbu / NanoBLASTer
  Basic Local Alignment and Search Tool for Oxford Nanopore Long Sequences
  ☆10Updated 9 years ago
• dkoslicki / CMash
  Fast and accurate set similarity estimation via containment min hash
  ☆42Updated last year
• Ritu-Kundu / Superbubbles
  SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.
  ☆12Updated 6 years ago
• medvedevgroup / TwoPaCo
  A fast constructor of the compressed de Bruijn graph from many genomes
  ☆42Updated last month
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆15Updated 7 years ago
• NVIDIA-Genomics-Research / racon-gpu
  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads
  ☆17Updated 5 years ago
• ueser / FIDDLE
  Flexible Integration of Data with Deep LEarning
  ☆51Updated 2 years ago
• RUSH-LAB / RAMBO
  ☆20Updated 5 years ago
• kundajelab / dfim
  Deep Feature Interaction Maps (DFIM)
  ☆54Updated 6 years ago
• txje / c-minhash
  Simple and fast MinHash implementation in C with Python wrapper
  ☆13Updated 5 months ago