Check strandedness of RNA-Seq fastq files
☆130Aug 30, 2022Updated 3 years ago
Alternatives and similar repositories for how_are_we_stranded_here
Users that are interested in how_are_we_stranded_here are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Merge fastq files split over lanes☆20Feb 13, 2018Updated 8 years ago
- ☆21Dec 26, 2025Updated 4 months ago
- Library for visualising genomic features in Python.☆15May 12, 2017Updated 8 years ago
- a lexicographically-based GTF/GFF sorter☆38Mar 16, 2026Updated last month
- Code for producing the analysis in the "Quantifying the tradeoff between sequencing depth and cell number in single-cell RNA-seq" manuscr…☆16Feb 5, 2020Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Differential RhythmicitY analysis in R is an R package that provides the statistical framework to assess differential rhythmicity of a ti…☆20Feb 2, 2026Updated 3 months ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Jan 28, 2020Updated 6 years ago
- Detecting sites of genomic enrichment☆201May 8, 2023Updated 2 years ago
- A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data☆21May 24, 2021Updated 4 years ago
- A tool to find sequencing data and metadata from public databases.☆597Aug 13, 2024Updated last year
- An efficient way to guess the library type of your RNA-Seq data.☆33Oct 11, 2022Updated 3 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆298Nov 6, 2025Updated 5 months ago
- Standard regression functions in R enabled for parallel processing over large data-frames.☆38Sep 24, 2023Updated 2 years ago
- Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data☆40Feb 19, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- R interface to megadepth: BigWig and BAM related utilities☆14Mar 31, 2026Updated last month
- ☆33Jul 8, 2025Updated 9 months ago
- combining p-values using modified stouffer-liptak for spatially correlated results (probes)☆47Mar 18, 2022Updated 4 years ago
- reference-free transcriptome assembly for short and long reads☆109Mar 13, 2026Updated last month
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Oct 11, 2019Updated 6 years ago
- Subset of fast5 files contained in a fastq, BAM, or SAM file.☆12Mar 29, 2023Updated 3 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆28Sep 13, 2023Updated 2 years ago
- parallel fastq-dump wrapper☆306Apr 26, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Scalable genomic analysis pipelines, written in WDL☆12Mar 11, 2026Updated last month
- Find circRNAs in RNA-seq data.☆15Jul 5, 2016Updated 9 years ago
- Efficient querying of biological databases☆44Oct 27, 2025Updated 6 months ago
- ☆12Mar 21, 2026Updated last month
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆22Oct 15, 2024Updated last year
- kaamer - protein identification based on amino acid kmers☆12Mar 7, 2023Updated 3 years ago
- GEO RNA-seq Experiments Processing Pipeline☆22Oct 25, 2019Updated 6 years ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆41Sep 17, 2021Updated 4 years ago
- Differential expression and allelic analysis, nonparametric statistics☆32Jan 3, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆14Jun 10, 2025Updated 10 months ago
- Single Cell RNA-seq UMI Filtering Facilitator☆11Oct 6, 2025Updated 6 months ago
- FamDB file format library and utilities☆41Aug 27, 2025Updated 8 months ago
- nucleosome calling using ATAC-seq☆111Dec 20, 2020Updated 5 years ago
- AIDE: annotation-assisted isoform discovery and quantification from RNA-seq data☆14Aug 6, 2022Updated 3 years ago
- Fast, efficient RNA-Seq metrics for quality control and process optimization☆178Nov 2, 2024Updated last year
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆32Mar 17, 2026Updated last month