signalbash / how_are_we_stranded_here
Check strandedness of RNA-Seq fastq files
☆121Updated 2 years ago
Alternatives and similar repositories for how_are_we_stranded_here:
Users that are interested in how_are_we_stranded_here are comparing it to the libraries listed below
- Generate IGV style locus tracks from bigWig files in R☆158Updated 5 months ago
- Publication quality NGS track plotting☆112Updated 2 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆112Updated 2 months ago
- Detecting sites of genomic enrichment☆189Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆109Updated 2 years ago
- RNA-Seq analysis workflow☆104Updated 3 years ago
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆91Updated 3 weeks ago
- Visualizing transcript structure and annotation using ggplot2☆154Updated 7 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆215Updated last week
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆151Updated this week
- ☆59Updated 11 months ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 5 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆127Updated 2 months ago
- Allele-specific alignment sorting☆55Updated 2 years ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆78Updated this week
- ☆86Updated 3 weeks ago
- Basic workflow for ATAC-seq analysis☆77Updated last year
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆206Updated this week
- fork of RSeQC python RNAseq metrics suit of tools☆47Updated 6 years ago
- Command-line tool for the visualization of splicing events across multiple samples☆128Updated 9 months ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆213Updated 10 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated last year
- A short tutorial on how to use RSEM☆136Updated 4 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆107Updated 4 years ago
- release version☆51Updated 2 years ago
- ASCAT R package☆179Updated 3 weeks ago
- optimization of ribosome P-site positioning in ribosome profiling data☆50Updated last month
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆140Updated last year
- A toolset for profiling alternative splicing events in RNA-Seq data.☆80Updated 2 months ago
- ☆131Updated 6 years ago