An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
☆136Oct 1, 2026Updated last week
Alternatives and similar repositories for IsoformSwitchAnalyzeR
Users that are interested in IsoformSwitchAnalyzeR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python library to visualize and analyze long-read transcriptomes☆70Jan 19, 2026Updated 8 months ago
- Visualizing transcript structure and annotation using ggplot2☆171Aug 24, 2024Updated 2 years ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆258Oct 2, 2026Updated last week
- Technology agnostic long read analysis pipeline for transcriptomes☆162Jan 25, 2024Updated 2 years ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆69Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆25Feb 28, 2023Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆15May 17, 2022Updated 4 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆307Nov 6, 2025Updated 11 months ago
- ☆21Apr 20, 2026Updated 5 months ago
- Isoform-level functional RNA-Seq analysis 🧬☆41Jul 7, 2026Updated 3 months ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆20Sep 29, 2025Updated last year
- ☆312Aug 10, 2026Updated 2 months ago
- Differential expression and allelic analysis, nonparametric statistics☆33Oct 1, 2026Updated last week
- ☆39Apr 25, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆14Aug 5, 2020Updated 6 years ago
- ENCODE long read RNA-seq pipeline☆55Apr 13, 2026Updated 5 months ago
- Long-read Isoform Quantification and Analysis☆41Mar 25, 2025Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆68Oct 11, 2024Updated 2 years ago
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆14Apr 5, 2026Updated 6 months ago
- A universal toolkit for upstream processing of long RNA reads☆242Updated this week
- ☆164Jun 29, 2026Updated 3 months ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated 2 years ago
- ☆17Jan 13, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆68Mar 19, 2026Updated 6 months ago
- Full-Length Alternative Isoform analysis of RNA☆258Updated this week
- ☆17Jul 19, 2024Updated 2 years ago
- iread☆26Jul 16, 2021Updated 5 years ago
- ☆39Aug 6, 2026Updated 2 months ago
- Generate IGV style locus tracks from bigWig files in R☆193Oct 28, 2024Updated last year
- Accelerate the generation of personalized proteomes from a Variant calling format (VCF) file and a reference proteome using graphical pro…☆21Apr 28, 2023Updated 3 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆236Jun 1, 2024Updated 2 years ago
- Scripts to import your FeatureCounts output into DEXSeq☆35Oct 27, 2018Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Gencode UTR fix☆17Jan 11, 2023Updated 3 years ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆936Oct 5, 2026Updated last week
- Command-line tool for the visualization of splicing events across multiple samples☆143Jun 28, 2024Updated 2 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆51May 26, 2026Updated 4 months ago
- DTU analysis tool inspired by llamas☆12Aug 19, 2026Updated last month
- ☆54Aug 1, 2024Updated 2 years ago
- Visualization toolkit for differential splicing events☆21Apr 19, 2026Updated 5 months ago