kvittingseerup / IsoformSwitchAnalyzeRLinks
An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
☆118Updated 2 weeks ago
Alternatives and similar repositories for IsoformSwitchAnalyzeR
Users that are interested in IsoformSwitchAnalyzeR are comparing it to the libraries listed below
Sorting:
- Check strandedness of RNA-Seq fastq files☆125Updated 3 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 9 months ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 11 months ago
- Publication quality NGS track plotting☆114Updated 2 weeks ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 3 months ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated last week
- Command-line tool for the visualization of splicing events across multiple samples☆131Updated last year
- RNA-Seq analysis workflow☆105Updated 4 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆49Updated 6 years ago
- Generate IGV style locus tracks from bigWig files in R☆172Updated 11 months ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆29Updated 8 months ago
- This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.☆87Updated 9 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆80Updated 4 years ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆83Updated last week
- Visualizing transcript structure and annotation using ggplot2☆160Updated last year
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆141Updated 2 months ago
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last week
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 8 months ago
- ☆96Updated last week
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆103Updated last month
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- ☆59Updated 3 months ago
- Allele-specific alignment sorting☆59Updated 2 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆131Updated last year
- Estimate locus specific human LINE-1 expression.☆39Updated last month
- ☆72Updated 2 years ago