vanallenlab / comutLinks
CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots
☆96Updated last year
Alternatives and similar repositories for comut
Users that are interested in comut are comparing it to the libraries listed below
Sorting:
- Tools for working with BUS files☆102Updated 6 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆82Updated 4 years ago
- ☆72Updated 2 years ago
- Full-length transcriptome splicing and mutation analysis☆85Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 2 months ago
- Publication quality NGS track plotting☆117Updated 2 months ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆150Updated last year
- Genomic coordinates of problematic genomic regions as GRanges☆47Updated this week
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆81Updated 6 months ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆83Updated 10 months ago
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆32Updated 4 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆78Updated 2 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Updated 8 months ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆70Updated 2 weeks ago
- ☆39Updated 5 years ago
- Estimate locus specific human LINE-1 expression.☆39Updated last month
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 4 months ago
- ☆81Updated 8 months ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆99Updated last week
- ☆49Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 2 months ago
- Quantification of transposable element expression using RNA-seq☆76Updated last year
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆76Updated last week
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆122Updated 2 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆72Updated 11 months ago
- Extract 3D contacts (.pairs) from sequencing alignments☆120Updated last month
- ☆120Updated 2 years ago