vanallenlab / comutLinks
CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots
☆95Updated last year
Alternatives and similar repositories for comut
Users that are interested in comut are comparing it to the libraries listed below
Sorting:
- Tools for working with BUS files☆101Updated 4 months ago
- ☆39Updated 5 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- Estimate locus specific human LINE-1 expression.☆39Updated 3 weeks ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆59Updated last week
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆142Updated last year
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 8 months ago
- machine-readable file format for genomic library sequence and structure☆123Updated last month
- Links to ATAC-seq analysis tools☆70Updated 4 years ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆71Updated 3 weeks ago
- ☆78Updated 5 months ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆78Updated 4 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆80Updated 4 years ago
- ☆72Updated 2 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 9 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆112Updated 10 months ago
- ☆62Updated 5 years ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆37Updated last year
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆120Updated last year
- A single cell transcriptomics pipeline for QC, integration and making the data presentable☆77Updated 3 weeks ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆117Updated 8 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 3 years ago
- nucleosome calling using ATAC-seq☆107Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- Genomic coordinates of problematic genomic regions as GRanges☆42Updated last month
- IDR☆30Updated 2 years ago
- Publication quality NGS track plotting☆114Updated 3 years ago