vanallenlab / comutLinks
CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots
☆95Updated last year
Alternatives and similar repositories for comut
Users that are interested in comut are comparing it to the libraries listed below
Sorting:
- Tools for working with BUS files☆101Updated 3 months ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆80Updated 4 years ago
- Full-length transcriptome splicing and mutation analysis☆84Updated last year
- Quantification of transposable element expression using RNA-seq☆75Updated last year
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- ☆39Updated 5 years ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆120Updated last year
- Estimate locus specific human LINE-1 expression.☆38Updated 2 years ago
- ☆72Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆99Updated 10 months ago
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆68Updated this week
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated last month
- Genomic coordinates of problematic genomic regions as GRanges☆42Updated 3 weeks ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 7 months ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆77Updated 3 months ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆140Updated last year
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆37Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆59Updated 3 months ago
- ☆77Updated 4 months ago
- ☆50Updated 3 years ago
- Collection of analysis tools for quantitative trait loci☆58Updated 3 weeks ago
- Extract 3D contacts (.pairs) from sequencing alignments☆116Updated 3 weeks ago
- Publication quality NGS track plotting☆114Updated 3 years ago
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆112Updated 10 months ago
- Probabilistic model for inferring clonal population structure from deep NGS sequencing.☆107Updated 5 years ago
- ☆46Updated 2 years ago
- ☆58Updated last month
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago