CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots
☆99Aug 1, 2024Updated last year
Alternatives and similar repositories for comut
Users that are interested in comut are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆29Oct 12, 2024Updated last year
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22May 21, 2024Updated last year
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Jan 28, 2022Updated 4 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Dec 31, 2025Updated 4 months ago
- ☆85Apr 17, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Integrative analysis of complex structural variants☆22Sep 7, 2020Updated 5 years ago
- Various algorithms for analysing genomics data☆275Updated this week
- Somatic copy variant caller (CNV) for next generation sequencing☆76Sep 12, 2024Updated last year
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆116Sep 2, 2024Updated last year
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆77Feb 19, 2026Updated 2 months ago
- ☆10Jan 21, 2023Updated 3 years ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- Utility functions for FACETS☆39Oct 24, 2025Updated 6 months ago
- Curated list of TCGA resources☆61Nov 10, 2017Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.☆488Feb 25, 2026Updated 2 months ago
- Easy Copy Number !☆21Aug 27, 2025Updated 8 months ago
- Scripts used for the ACT paper☆12May 6, 2021Updated 4 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆114Apr 23, 2024Updated 2 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆159Feb 12, 2026Updated 2 months ago
- Published at Bioinformatics☆12Jul 4, 2024Updated last year
- ☆11May 26, 2023Updated 2 years ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆67Dec 25, 2022Updated 3 years ago
- ASCAT R package☆199Feb 12, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Evolutionary frequency visualization tool of temporal data☆24Jan 25, 2022Updated 4 years ago
- Telomerecat: The telomere computational analysis tool☆23Aug 4, 2021Updated 4 years ago
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆119Feb 8, 2026Updated 2 months ago
- GWAS Survival Package in R☆13Nov 16, 2023Updated 2 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆133Jan 6, 2021Updated 5 years ago
- A long-read SV calling pipeline☆12Aug 13, 2021Updated 4 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆149Sep 9, 2020Updated 5 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆12Apr 15, 2026Updated 2 weeks ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Apr 8, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A framework to infer mutational signatures in cancer over time☆58Jul 9, 2019Updated 6 years ago
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆71Mar 19, 2026Updated last month
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Apr 13, 2026Updated 2 weeks ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- 3D hotspot mutation proximity analysis tool☆53Mar 31, 2023Updated 3 years ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Oct 22, 2018Updated 7 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago