kircherlab / CADD-scripts
CADD scripts release for offline scoring. For more information about CADD, please visit our website
☆77Updated 3 months ago
Alternatives and similar repositories for CADD-scripts:
Users that are interested in CADD-scripts are comparing it to the libraries listed below
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 3 weeks ago
- ☆67Updated last year
- ☆54Updated 3 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- Tip and tricks for BAM files☆84Updated 6 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆44Updated 2 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 3 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆62Updated 4 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆48Updated 2 weeks ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆73Updated 3 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated last year
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆84Updated last month
- HiC uniform processing pipeline☆60Updated last year
- Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay☆56Updated 3 years ago
- Relevant papers for CNV and SV approaches☆94Updated 4 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- Burden testing against public controls☆50Updated last year
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆109Updated 4 years ago
- Unsorted scripts for bioinformatics☆60Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- A software for calculating telomere length☆68Updated 6 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆36Updated last month
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 6 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆70Updated 4 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆42Updated 3 weeks ago
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆49Updated last week
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago