kircherlab / CADD-scripts

Related projects: ⓘ

• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆74Updated 7 months ago
• Jeltje / varscan2
  Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2
  ☆28Updated 6 years ago
• parklab / ShatterSeek
  ☆65Updated last year
• kundajelab / 3DChromatin_ReplicateQC
  Software to compute reproducibility and quality scores for Hi-C data
  ☆43Updated 5 years ago
• WGLab / CancerVar
  Clinical interpretation of somatic mutations in cancer
  ☆42Updated 2 years ago
• bahlolab / bioinfotools
  Documenting usage and experience with bioinformatic tools
  ☆39Updated 9 years ago
• ICBI / viGEN
  viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
  ☆26Updated 6 months ago
• heathsc / gemBS
  gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…
  ☆32Updated 2 years ago
• parklab / LiRA
  ☆18Updated 2 years ago
• gagneurlab / absplice
  ☆33Updated last week
• ding-lab / MuSiC2
  identifying mutational significance in cancer genomes
  ☆59Updated last year
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆82Updated 6 years ago
• broadinstitute / RNA_MUTECT_1.0-1
  ☆36Updated 4 years ago
• kundajelab / idr
  IDR
  ☆30Updated last year
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆49Updated 6 months ago
• ratschlab / pancanatlas_code_public
  Public repository containing research code for the TCGA PanCanAtlas Splicing project
  ☆41Updated 3 years ago
• liguowang / CrossMap
  CrossMap is a python program to lift over genome coordinates from one genome version to another.
  ☆73Updated last month
• YeoLab / outrigger
  Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data
  ☆61Updated 4 years ago
• cancerit / alleleCount
  Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…
  ☆43Updated 2 years ago
• ENCODE-DCC / hic-pipeline
  HiC uniform processing pipeline
  ☆56Updated 10 months ago
• ding-lab / PanCanAtlasGermline
  ☆42Updated 5 years ago
• mskcc / mutation-signatures
  Create mutation signatures from MAF's, and decompose them into Stratton signatures
  ☆59Updated 5 years ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆43Updated 8 months ago
• TRON-Bioinformatics / seq2HLA
  In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…
  ☆46Updated last year
• vastgroup / vast-tools
  A toolset for profiling alternative splicing events in RNA-Seq data.
  ☆77Updated 2 months ago
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆44Updated this week
• nanoporetech / sockeye
  ☆38Updated this week
• gatk-workflows / seq-format-conversion
  Workflows for converting between sequence data formats
  ☆36Updated 3 years ago
• Oshlack / Clinker
  Gene Fusion Visualiser
  ☆51Updated last year
• CshlSiepelLab / LINSIGHT
  ☆24Updated 3 months ago