kircherlab / CADD-scriptsLinks
CADD scripts release for offline scoring. For more information about CADD, please visit our website
☆90Updated 2 months ago
Alternatives and similar repositories for CADD-scripts
Users that are interested in CADD-scripts are comparing it to the libraries listed below
Sorting:
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆50Updated 2 years ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆107Updated 2 months ago
- Analysis pipeline for the GUIDE-seq assay.☆80Updated 2 years ago
- Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.☆135Updated last year
- Hail helper functions for the gnomAD project and Translational Genomics Group☆98Updated last week
- Clinical interpretation of somatic mutations in cancer☆50Updated 10 months ago
- ☆72Updated 2 years ago
- ☆74Updated 4 years ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆84Updated last year
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆123Updated 3 months ago
- small rna-seq analysis package☆30Updated 3 years ago
- Extract data quickly from Juicebox via straw☆69Updated 9 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆75Updated 2 years ago
- ☆60Updated 5 months ago
- ☆49Updated 3 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆81Updated 11 months ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆69Updated 5 months ago
- A tool for bigWig files.☆118Updated 7 years ago
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆111Updated 5 months ago
- nucleosome calling using ATAC-seq☆109Updated 5 years ago
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆75Updated 3 years ago
- ☆40Updated 6 months ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Updated 9 months ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆91Updated 2 months ago
- optimization of ribosome P-site positioning in ribosome profiling data☆57Updated 10 months ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆112Updated last year
- Analysis of epigenetic signals captured by fragmentation patterns of cell-free DNA☆77Updated 5 years ago
- Quantification of transposable element expression using RNA-seq☆78Updated last year
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆80Updated 3 weeks ago