Alternatives and similar repositories for AtacWorks

Users that are interested in AtacWorks are comparing it to the libraries listed below

• urmi-21 / COVID-19-RNA-Seq-datasets
  A repository for sharing information on available COVID-19 RNA-Seq datasets
  ☆81Updated 3 years ago
• pachterlab / kallistobustools
  kallisto | bustools workflow for pre-processing single-cell RNA-seq data
  ☆119Updated 3 years ago
• Xinglab / DARTS
  Deep-learning Augmented RNA-seq analysis of Transcript Splicing
  ☆115Updated 2 years ago
• theislab / sfaira
  data and model repository for single-cell data
  ☆136Updated 2 years ago
• asncd / MIMOSCA
  A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.
  ☆98Updated 6 years ago
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆84Updated 4 years ago
• wckdouglas / diffexpr
  Porting DESeq2 into python via rpy2
  ☆67Updated 2 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆50Updated 2 years ago
• KrishnaswamyLab / SingleCellWorkshop
  ☆96Updated 5 years ago
• ucscXena / xenaPython
  Python API for Xena Hub
  ☆55Updated 2 years ago
• kundajelab / bpnet
  Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
  ☆174Updated 4 months ago
• r-bioinformatics / edgePy
  A Python implementation of edgeR for differential expression analysis
  ☆104Updated 6 years ago
• vanheeringen-lab / ANANSE
  Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed in…
  ☆90Updated last year
• scverse / scanpy_usage
  Scanpy use cases.
  ☆90Updated 5 years ago
• tobiasrausch / ATACseq
  Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
  ☆75Updated 2 years ago
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 4 years ago
• kundajelab / alzheimers_parkinsons
  Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis
  ☆46Updated 5 years ago
• pachterlab / kb_python
  A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
  ☆181Updated 2 weeks ago
• aertslab / SCope
  Fast visualization tool for large-scale and high dimensional single-cell data
  ☆77Updated last month
• AllonKleinLab / SPRING
  ☆69Updated 7 years ago
• deweylab / CellO
  CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
  ☆68Updated 2 years ago
• shwhalen / ml-pitfalls
  Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"
  ☆46Updated 2 years ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆120Updated 6 months ago
• vib-singlecell-nf / vsn-pipelines
  A repository of pipelines for single-cell data in Nextflow DSL2
  ☆80Updated 2 years ago
• BIMSBbioinfo / compgen2021
  ☆77Updated 4 years ago
• calico / solo
  software to detect doublets
  ☆96Updated last year
• mdozmorov / Cancer_notes
  A continually expanding collection of cancer genomics notes and data
  ☆116Updated this week
• czbiohub-sf / tabula-muris-senis
  Tabula Muris Senis
  ☆108Updated 2 years ago
• parashardhapola / scarf
  Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…
  ☆111Updated 2 months ago
• FunctionLab / ExPecto
  predicting expression effects of human genome variants ab initio from sequence
  ☆132Updated last year