Deep learning based processing of Atac-seq data
☆133Feb 16, 2023Updated 3 years ago
Alternatives and similar repositories for AtacWorks
Users that are interested in AtacWorks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scasat is a single cell ATAC-seq preprocessing and analysis pipeline☆35Feb 27, 2019Updated 7 years ago
- Examples of single-cell genomic analysis accelerated with RAPIDS☆346Aug 27, 2025Updated 7 months ago
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆13Jan 12, 2024Updated 2 years ago
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- Fast FASTQ sample demultiplexing in Rust.☆67Mar 27, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Benchmarking computational single cell ATAC-seq methods☆185Nov 30, 2020Updated 5 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆27Feb 4, 2023Updated 3 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆322Apr 27, 2023Updated 2 years ago
- Fast alignment and preprocessing of chromatin profiles☆217Mar 20, 2026Updated 3 weeks ago
- R package for gene selection using k-NN graphs.☆13Jun 12, 2023Updated 2 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Nov 24, 2018Updated 7 years ago
- scWGCNA☆63Nov 8, 2022Updated 3 years ago
- Heterogeneity Induced Pre-Processing tOol☆18Aug 15, 2021Updated 4 years ago
- Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…☆120Mar 17, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- SDK for GPU accelerated genome assembly and analysis☆300May 3, 2024Updated last year
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Jul 12, 2023Updated 2 years ago
- ☆21Nov 15, 2020Updated 5 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Mar 16, 2026Updated 3 weeks ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆145Apr 5, 2024Updated 2 years ago
- Single-cell Scalable Visualization and Analytics☆27Mar 26, 2019Updated 7 years ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Jun 5, 2021Updated 4 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Dec 8, 2021Updated 4 years ago
- Jupyter notebook based genomic data visualization toolkit.☆254Dec 4, 2025Updated 4 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ENCODE ATAC-seq pipeline☆449Jul 18, 2024Updated last year
- Reference mapping for single-cell genomics☆401Mar 21, 2026Updated 3 weeks ago
- ☆20Mar 28, 2017Updated 9 years ago
- chromatin Variability Across Regions (of the genome!)☆187Jul 10, 2024Updated last year
- Differential ATAC-seq toolkit☆28Dec 21, 2023Updated 2 years ago
- Enhanced Chromatin Occupancy (EChO)☆13Jan 8, 2020Updated 6 years ago
- A tool to assess the quality and distribution of genomic data☆17Sep 3, 2021Updated 4 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆57Jun 1, 2025Updated 10 months ago
- Paired Insertion Counting for snATAC-seq data☆19Mar 15, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Documentations and Tutorials of Gosling.js☆12Sep 13, 2021Updated 4 years ago
- ☆18Sep 6, 2022Updated 3 years ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Apr 2, 2026Updated last week
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆242Mar 23, 2026Updated 2 weeks ago
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Sep 17, 2021Updated 4 years ago
- A toolkit for single-cell immune profiling☆366Apr 3, 2026Updated last week
- Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/☆48Aug 20, 2025Updated 7 months ago