Alternatives and similar repositories for GWAStutorial

Users that are interested in GWAStutorial are comparing it to the libraries listed below

• meyer-lab-cshl / plinkQC
  R package for quality control of plink genetic datasets
  ☆59Updated last week
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆47Updated 2 weeks ago
• neurogenetics / GWAS-pipeline
  This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GW…
  ☆42Updated 3 years ago
• eskederks / eMAGMA-tutorial
  A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
  ☆66Updated 4 years ago
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆76Updated last year
• melindacmills / IntroStatisticalGenetics
  GitHub site to accompany Textbook Introduction to Statistical Genetic Data Analysis
  ☆28Updated 5 years ago
• StatFunGen / xqtl-protocol
  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
  ☆44Updated this week
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆50Updated 3 months ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆63Updated 7 months ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 3 years ago
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆84Updated 3 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 3 weeks ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆109Updated 2 weeks ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆65Updated 2 years ago
• gabraham / plink2R
  Read PLINK BED/BIM/FAM files into R
  ☆41Updated 3 years ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆85Updated 3 years ago
• neurogenomics / MAGMA_Celltyping
  Find causal cell-types underlying complex trait genetics
  ☆85Updated 3 months ago
• xihaoli / STAARpipeline
  An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
  ☆64Updated 2 months ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆48Updated last month
• songw01 / MEGENA
  Multiscale embedded gene co-expression network analysis
  ☆53Updated last year
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆46Updated last week
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆116Updated 5 months ago
• hbctraining / DGE_workshop_salmon
  ☆72Updated 3 years ago
• AAlhendi1707 / GWAS
  Genome-wide Association Study (GWAS) Tutorial
  ☆40Updated 6 years ago
• CBIIT / LDlinkR
  LDlinkR
  ☆59Updated last year
• psoerensen / qgg
  Statistical tools for Quantitative Genetic Analyses
  ☆37Updated last week
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆45Updated last year
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆22Updated last year
• crazyhottommy / DNA-methylation-analysis
  DNA methylation analysis notes from Ming Tang
  ☆87Updated 5 years ago
• clagiamba / moloc
  ☆35Updated 4 years ago