Alternatives and similar repositories for GWAStutorial

Users that are interested in GWAStutorial are comparing it to the libraries listed below

• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆48Updated last month
• mikegloudemans / gwas-download
  Easily download publicly available GWAS summary statistics.
  ☆76Updated last year
• meyer-lab-cshl / plinkQC
  R package for quality control of plink genetic datasets
  ☆59Updated last week
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆86Updated 7 months ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 4 years ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆51Updated 2 months ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆67Updated 9 months ago
• eskederks / eMAGMA-tutorial
  A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.
  ☆68Updated 4 years ago
• melindacmills / IntroStatisticalGenetics
  GitHub site to accompany Textbook Introduction to Statistical Genetic Data Analysis
  ☆29Updated 5 years ago
• hbctraining / DGE_workshop_salmon
  ☆72Updated 3 years ago
• StatFunGen / xqtl-protocol
  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
  ☆47Updated this week
• CBIIT / LDlinkR
  LDlinkR
  ☆59Updated last year
• xihaoli / STAAR
  An R package for performing STAAR procedure in whole-genome sequencing studies
  ☆93Updated 5 months ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆121Updated 7 months ago
• jianyangqt / gcta
  GCTA software
  ☆98Updated last week
• FinucaneLab / pops
  ☆79Updated 3 years ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆85Updated 3 years ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆50Updated 5 months ago
• ramiromagno / gwasrapidd
  gwasrapidd: an R package to query, download and wrangle GWAS Catalog data
  ☆97Updated last month
• MRCIEU / gwasvcf
  Reading, querying and writing GWAS summary data in VCF format
  ☆84Updated last month
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆59Updated 5 years ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆113Updated last week
• crazyhottommy / DNA-methylation-analysis
  DNA methylation analysis notes from Ming Tang
  ☆87Updated 5 years ago
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆31Updated last month
• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆64Updated 9 months ago
• RitchieLab / eQTpLot
  Visualization of Colocalization Between eQTL and GWAS Data
  ☆84Updated 3 years ago
• neurogenetics / GWAS-pipeline
  This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GW…
  ☆42Updated 3 years ago
• choishingwan / PRS-Tutorial
  A tutorial on how to run basic polygenic risk score analysis
  ☆80Updated 2 years ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆48Updated 3 months ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆45Updated last year