theislab / hadge
Comprehensive pipeline for donor demultiplexing in single cell
☆24Updated 11 months ago
Alternatives and similar repositories for hadge:
Users that are interested in hadge are comparing it to the libraries listed below
- ☆29Updated 2 years ago
- ☆30Updated 3 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated last month
- Inferring gene co-expression networks from single cell gene expression data☆24Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- ☆20Updated last year
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 5 months ago
- ☆49Updated 9 months ago
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆17Updated last year
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆22Updated last week
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- An R package to analyze single-cell V(D)J data☆25Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- ☆21Updated 5 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- scSNV Mapping tool for 10X Single Cell Data☆25Updated last year
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated last week
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆31Updated last month
- ☆16Updated 9 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 7 months ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated 2 years ago
- A clusterability measure for scRNA-seq data.☆18Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆15Updated last year