theislab / hadgeLinks
Comprehensive pipeline for donor demultiplexing in single cell
☆24Updated 2 weeks ago
Alternatives and similar repositories for hadge
Users that are interested in hadge are comparing it to the libraries listed below
Sorting:
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 4 months ago
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated last year
- ☆22Updated last year
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- binned motif enrichment analysis and visualisation☆41Updated 3 weeks ago
- ☆29Updated 2 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆30Updated 2 years ago
- ☆32Updated 7 months ago
- ☆49Updated last year
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆17Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆56Updated 4 years ago
- ☆23Updated 3 years ago
- ☆17Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- ☆20Updated last year
- R package for Flexible dot plots☆29Updated 3 years ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆57Updated last year
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated 3 weeks ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 4 months ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆15Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆24Updated 9 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆20Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 5 months ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago