theislab / hadgeLinks
Comprehensive pipeline for donor demultiplexing in single cell
☆24Updated last week
Alternatives and similar repositories for hadge
Users that are interested in hadge are comparing it to the libraries listed below
Sorting:
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated 2 months ago
- ☆23Updated last year
- R package for Flexible dot plots☆29Updated 3 years ago
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- ☆29Updated 2 years ago
- ☆32Updated 10 months ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆31Updated 2 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated 3 weeks ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 8 months ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- ☆18Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆25Updated 2 months ago
- scover☆24Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- ☆20Updated 2 years ago
- ☆39Updated 4 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- binned motif enrichment analysis and visualisation☆43Updated last month
- Bead-based single-cell atac processing☆33Updated 4 years ago
- SCASA: Single cell transcript quantification tool☆22Updated 2 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 5 years ago
- ☆52Updated last year